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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_15566 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 301aa MW: 32113.7 Da PI: 10.0085 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.8e-20 | 97 | 147 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aaka+++a+++++g+ PEQU_15566 97 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAAKAYDEAALRFRGN 147 7********.**********7.....337*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-13 | 97 | 146 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.24E-20 | 97 | 156 | No hit | No description |
PROSITE profile | PS51032 | 25.409 | 97 | 154 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-32 | 97 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-36 | 97 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-22 | 97 | 155 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.5E-11 | 98 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MDRAAAAAPS SSSSFISPGG GGGGGGIKRE REELMSPKSV RHYRGFFAGE SSTSSAAPKQ 60 SRQSYLAIAQ SPFSSTPATL QEPPTLPPDT EKEVHRRYRG VRQRPWGKWA AEIRDPHKAA 120 RVWLGTFETA EAAAKAYDEA ALRFRGNKAK LNFPEAVQLQ QPINVSPAIR LTESGPPART 180 TEPVWPSSLS QTMGMARDYV EYSRLLQGTG EYQGMPPTAL LDQLMHSSSS MASTSHKEPS 240 FGSHSVSSPP FSISSSYSAA AEAGRQMGVF WPPGGGTNTS PSSPSSSPPW NASAMDPPRS 300 G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-23 | 98 | 158 | 6 | 67 | ATERF1 |
3gcc_A | 3e-23 | 98 | 158 | 6 | 67 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020583787.1 | 0.0 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A2I0W4H6 | 1e-102 | A0A2I0W4H6_9ASPA; Ethylene-responsive transcription factor ERF114 | ||||
STRING | XP_008784254.1 | 2e-51 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP50848 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 5e-28 | ethylene response factor 110 |