PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15519
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family Trihelix
Protein Properties Length: 790aa    MW: 87773.8 Da    PI: 7.3258
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15519genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.14.6e-18699779186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+ +e+  Li+ r ++++++++ + +++lWe vs+ m+++g+ rs+ qCk+ w +l ++y++ ++ ek r     +++pyf+ ++
  PEQU_15519 699 KWKPEEITRLIKERGDLNSKFQTVRGRMALWENVSSIMSAHGIIRSSAQCKSLWASLVQKYEESRNDEKIR-----KSWPYFNAVD 779
                 7*****************************************************************99986.....56****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.101.3E-6720270IPR001279Metallo-beta-lactamase
SuperFamilySSF562811.82E-7421435IPR001279Metallo-beta-lactamase
SMARTSM008498.3E-2533230IPR001279Metallo-beta-lactamase
PfamPF127061.2E-1045180IPR001279Metallo-beta-lactamase
PfamPF075213.6E-7372407IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500906.609696756IPR017877Myb-like domain
PfamPF138379.8E-15697781No hitNo description
CDDcd122033.40E-17698763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MDDSVQRKLE QFYEGPNGPP IRVLPIGGLG EIGMNCMLVG NYDRYILIDA GVMFPDYDEL  60
GVQKIIPDTA FIKRWSSKIE AVVITHGHED HIGALPWVIP ALDSNTPVYA SSFTMELIKK  120
RLKEFGIFIP SRLKVFKCRE KFLAGPFEVE PLRVTHSIPD CCGLVLRCKD GTVFHTGDWK  180
IDESPLDGKA FDRESLEELS KEGVTLMMSD STNVLSPGRT LSEAVVAESL LRHISSVKGR  240
VITTQFASNI HRIGSVKAAA DLTGRKLVFV GMSLRTYLDA AFRDGKAPMD PSTLVKVEDI  300
DAYPPNGLLI VTTGSQAEPR AALNLASFGG SHSLKLTKED VILYSAKVIP GNETRVMKML  360
NRISELGPTV VMGKNELLHT SGHGYREELE EVLRIVKPQH FLPVHGELLF LKEHELVGKS  420
TGIKHTAVIK NGEMLGVSHL RNRRVLSNGF ALLGKEDLQL MYSDGDKAFG TSAELCIDER  480
LRIAFDGILI VCMEISRPRH INGSSQPCLK GKIRISTRCL WLDKGKLLDA LYKAAHAALS  540
SCPVNCPLVH MERIVSEVLR KVVRKYCSRR PEVIAIAVEN TVGALSEELR ERIAGKTYGG  600
FDSSAMNQHL DIRMRKDSSS SFDEDTANVM RNLIETEAED DYFVAEKSHV EDPLLESEDL  660
EDENTSSVEH VKSSNASGGE SMKVSEAKTG SPKPGKRNKW KPEEITRLIK ERGDLNSKFQ  720
TVRGRMALWE NVSSIMSAHG IIRSSAQCKS LWASLVQKYE ESRNDEKIRK SWPYFNAVDK  780
ILSAPQEAAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zq4_A7e-852349511473RIBONUCLEASE J 1
3zq4_C7e-852349511473RIBONUCLEASE J 1
3zq4_D7e-852349511473RIBONUCLEASE J 1
3zq4_E7e-852349511473RIBONUCLEASE J 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020576945.10.0uncharacterized protein LOC110022382 isoform X1
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A2I0AGZ10.0A0A2I0AGZ1_9ASPA; Trihelix transcription factor GT-3a
STRINGXP_008811801.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49963542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]