PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15481
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 530aa    MW: 59258.6 Da    PI: 7.2306
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15481genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.28.2e-20405498393
                 EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 kvl++sdv+++gr+vlpkk ae h   ++++ ++ + +ed   +r+W++++++  ++ks++y+l+ ++ +FvkangL+egDf+v++ d  +++++v
  PEQU_15481 405 KVLKQSDVGSLGRIVLPKKEAEIHlpVLDTRDGISIEMEDiGASRVWNMRYRFwpNNKSRMYLLE-NTGDFVKANGLQEGDFIVIYSDA-KSGKYV 498
                 99*******************999**88899999******7777*******99777777777777.********************443.666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-28397500IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-24401499IPR015300DNA-binding pseudobarrel domain
CDDcd100152.14E-30401491No hitNo description
SMARTSM010191.7E-19403505IPR003340B3 DNA binding domain
PROSITE profilePS5086310.997403505IPR003340B3 DNA binding domain
PfamPF023622.8E-16405498IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MDAGFDILGD EIDLWESCMD PIESSTWDSS PSFFPNGREF PAGGGSSSRE ADPQASNKEK  60
MGSLFAGDDG NFSEDLANVF LDWLKRNKDS ISPEDLRSIK LKRSTIECAA RRLGGGQQGR  120
VQLLKLILSW VQNHHLQKKR RRTRGSEAAG RDQELTNHPL PPPPIPPPPP QIATISNPNI  180
DLYYDALPSN TWVPYAGEPS YPPVMPGYRD EAVPPYNYYN NQAFTAQPWQ QGFSTPSTSS  240
VIHYSQMPLP VPMPAQAPAL APPPVQYVQN LPVYYTGHMA SATKEARKKR MARHRKSSSF  300
HHHRSQQVQN QQQQSLDTSV ATDHESSSAH SNFNKENSTS LLSSLPADIP SSSSSSASAP  360
AMLRMQEENH PHKRTASPAS ERLRVKDDAQ EGIKSENNYK FLLRKVLKQS DVGSLGRIVL  420
PKKEAEIHLP VLDTRDGISI EMEDIGASRV WNMRYRFWPN NKSRMYLLEN TGDFVKANGL  480
QEGDFIVIYS DAKSGKYVLL SLSLSLSLSL SIYIYIYIYI NVLTMMDVCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-374004992101B3 domain-containing transcription factor FUS3
6j9b_D6e-374004992101B3 domain-containing transcription factor FUS3
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8882998e-51AJ888299.1 Phalaenopsis aphrodite subsp. formosana microsatellite DNA, clone E2-3-14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020576912.10.0regulatory protein viviparous-1-like isoform X1
TrEMBLA0A2I0VCQ80.0A0A2I0VCQ8_9ASPA; Regulatory protein viviparous-1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.19e-57B3 family protein