PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_15342 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 406aa MW: 45262.3 Da PI: 7.9467 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H PEQU_15342 6 FICEVCSKGFQREQNLQLHRRGH 28 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ PEQU_15342 78 WKCDKCSKRYAVQSDWKAHSKTC 100 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.37E-9 | 5 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 7.5E-5 | 6 | 28 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.928 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.011 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.37E-9 | 73 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-4 | 73 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 140 | 78 | 98 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MATNRFICEV CSKGFQREQN LQLHRRGHNL PWKLKQKSNK EVRRRVYLCP EPSCVHHDPS 60 RALGDLTGIS RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC GTREYRCDCG TLFSRRDSFI 120 THRAFCDALA QESSRLPTIG SHFYRNNNNN NNFALSHHLS SLHYQNQNHQ ISPELLRPTT 180 FFLTGDDALQ TKPSFHGLIH LPDLQPNSHN TSSSPSNPFN LSFFSNNNQN SQFINSSGNL 240 MNDQMQAVFS NGVLPQMSAT ALLQKAAEMG ATSSLGEQNL RAQVENHEKH LMDIMNSFAN 300 GSPGVFVGGG GGEEEEVDVK FAEFDDAGLC NMEEGRYQNN GLTRDFLGVG SMLRSMGGGI 360 GLDHGGINKS VSSNRLYHAG SFGSGRREMG EEEEEEMRGN GGNGLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 74 | 139 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 74 | 139 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020575080.1 | 0.0 | LOW QUALITY PROTEIN: protein indeterminate-domain 5, chloroplastic-like | ||||
Swissprot | Q8GYC1 | 2e-96 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A2I0XAH0 | 0.0 | A0A2I0XAH0_9ASPA; Zinc finger protein MAGPIE | ||||
STRING | XP_008804317.1 | 1e-131 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1733 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14580.2 | 1e-93 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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