PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NF-YC

Protein Properties

Length: 100aa MW: 11430.2 Da PI: 9.3015

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_14565	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	98.2	6.2e-31	3	91	10	100
NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 i+ ++++knh+lPl+r +ki+k +e+vkmi+ae+P++lska elfilelt sw +a++nkr+tl++ i++ +++ ++fdflvdivp ++ PEQU_14565 3 IKVHKNIKNHSLPLTR-QKIMKDNEHVKMITAEVPAFLSKARELFILELTHGSWCQADQNKRKTLQR-GISSEIAEHQVFDFLVDIVPVKN 91 667899********.79*******************************************9.59***************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.9E-10	14	67	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.8E-20	14	88	IPR009072	Histone-fold
SuperFamily	SSF47113	1.24E-15	22	88	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
QDIKVHKNIK NHSLPLTRQK IMKDNEHVKM ITAEVPAFLS KARELFILEL THGSWCQADQ 60 NKRKTLQRGI SSEIAEHQVF DFLVDIVPVK NVAESWAAVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	5e-25	1	88	5	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020571601.1	4e-43	nuclear transcription factor Y subunit C-2-like isoform X1
Refseq	XP_020571603.1	4e-43	nuclear transcription factor Y subunit C-6-like isoform X3
Swissprot	Q9XE33	5e-26	NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBL	A0A2H9ZQS6	2e-28	A0A2H9ZQS6_9ASPA; Nuclear transcription factor Y subunit C-2
STRING	Sb07g028600.1	1e-25	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	2e-27	nuclear factor Y, subunit C4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]