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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_14488 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GRAS | ||||||||
Protein Properties | Length: 427aa MW: 48013.3 Da PI: 6.4502 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 295.6 | 1.3e-90 | 71 | 426 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 v++L+++Ae v++g++ a+ +Larl+++ sp g+p+ R a+yf+eAL+ +++ + ++ + s+ + + +l+a+k+fsevsPi++f+ +ta PEQU_14488 71 VDVLYKAAELVEAGNFVGAHVILARLNHHlPSPIGKPLFRSAFYFKEALQFFVNSVNP------QAATFSPLDAVIKLSAYKAFSEVSPIPQFTCFTAT 163 689************************999************************9333......33444445578899********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 qa+le++ +++++HiiDfdis G+QW ++lq+La+R+++ l+iT+++sp++++ el+ t+e+L +fA+ l++pfe+++ ++++ e+ +L+ PEQU_14488 164 QALLEELGTANCIHIIDFDISFGGQWSSFLQELAQRRSPRIlLLKITALVSPSAFHPLELHLTRENLCRFAADLNIPFEIRFTNIEAFDPAEILALSAG 262 ************************************99987799**************************************98889999999999999 PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 ++E++aVnl + + + +++L+lvk+l Pk+v+ v++ +n+ +F ++fl+al+ ++ ++ds++a + + + +k+E+++l+++i+n PEQU_14488 263 TNESIAVNLPVDAWQGP--------SFPTLLRLVKQLLPKIVISVDHGFGRNDLPFSHHFLHALQSCAIFLDSIDAA-GIDLDVVNKIEKFVLQPKIEN 352 9**********998888........3667*********************************************888.7899***************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ + + e+ W ++e+aGFkpv++s+++++qa++ll++ +++g++ve++++sl+l Wk+ +L svS+W+ PEQU_14488 353 CINRHHCA----AEKILPWPTQFESAGFKPVQFSSFTEMQAECLLKRLQVKGFHVEKRQASLYLHWKRGELASVSVWK 426 ****9999....999**************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.154 | 44 | 406 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-88 | 71 | 426 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MFFEEPVVEK SQFFCPDIPF NQHLLSEDST NPAIFAPCPS FTPSQLLEQS LNFPQLQVFP 60 YPQQQQQQVV VDVLYKAAEL VEAGNFVGAH VILARLNHHL PSPIGKPLFR SAFYFKEALQ 120 FFVNSVNPQA ATFSPLDAVI KLSAYKAFSE VSPIPQFTCF TATQALLEEL GTANCIHIID 180 FDISFGGQWS SFLQELAQRR SPRILLLKIT ALVSPSAFHP LELHLTRENL CRFAADLNIP 240 FEIRFTNIEA FDPAEILALS AGTNESIAVN LPVDAWQGPS FPTLLRLVKQ LLPKIVISVD 300 HGFGRNDLPF SHHFLHALQS CAIFLDSIDA AGIDLDVVNK IEKFVLQPKI ENCINRHHCA 360 AEKILPWPTQ FESAGFKPVQ FSSFTEMQAE CLLKRLQVKG FHVEKRQASL YLHWKRGELA 420 SVSVWKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-24 | 105 | 426 | 37 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020583979.1 | 0.0 | scarecrow-like protein 6 | ||||
TrEMBL | A0A2I0VK35 | 0.0 | A0A2I0VK35_9ASPA; Scarecrow-like protein 6 | ||||
STRING | XP_008794809.1 | 1e-149 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2020 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-92 | GRAS family protein |