PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_14488
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 427aa    MW: 48013.3 Da    PI: 6.4502
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_14488genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.61.3e-90714262374
        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 v++L+++Ae v++g++  a+ +Larl+++  sp g+p+ R a+yf+eAL+  +++  +      ++ + s+ + + +l+a+k+fsevsPi++f+ +ta 
  PEQU_14488  71 VDVLYKAAELVEAGNFVGAHVILARLNHHlPSPIGKPLFRSAFYFKEALQFFVNSVNP------QAATFSPLDAVIKLSAYKAFSEVSPIPQFTCFTAT 163
                 689************************999************************9333......33444445578899********************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 qa+le++ +++++HiiDfdis G+QW ++lq+La+R+++    l+iT+++sp++++  el+ t+e+L +fA+ l++pfe+++   ++++  e+ +L+  
  PEQU_14488 164 QALLEELGTANCIHIIDFDISFGGQWSSFLQELAQRRSPRIlLLKITALVSPSAFHPLELHLTRENLCRFAADLNIPFEIRFTNIEAFDPAEILALSAG 262
                 ************************************99987799**************************************98889999999999999 PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 ++E++aVnl +   + +          +++L+lvk+l Pk+v+ v++   +n+ +F ++fl+al+ ++ ++ds++a  + + +  +k+E+++l+++i+n
  PEQU_14488 263 TNESIAVNLPVDAWQGP--------SFPTLLRLVKQLLPKIVISVDHGFGRNDLPFSHHFLHALQSCAIFLDSIDAA-GIDLDVVNKIEKFVLQPKIEN 352
                 9**********998888........3667*********************************************888.7899***************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++   + +     e+   W  ++e+aGFkpv++s+++++qa++ll++ +++g++ve++++sl+l Wk+ +L svS+W+
  PEQU_14488 353 CINRHHCA----AEKILPWPTQFESAGFKPVQFSSFTEMQAECLLKRLQVKGFHVEKRQASLYLHWKRGELASVSVWK 426
                 ****9999....999**************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.15444406IPR005202Transcription factor GRAS
PfamPF035144.5E-8871426IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MFFEEPVVEK SQFFCPDIPF NQHLLSEDST NPAIFAPCPS FTPSQLLEQS LNFPQLQVFP  60
YPQQQQQQVV VDVLYKAAEL VEAGNFVGAH VILARLNHHL PSPIGKPLFR SAFYFKEALQ  120
FFVNSVNPQA ATFSPLDAVI KLSAYKAFSE VSPIPQFTCF TATQALLEEL GTANCIHIID  180
FDISFGGQWS SFLQELAQRR SPRILLLKIT ALVSPSAFHP LELHLTRENL CRFAADLNIP  240
FEIRFTNIEA FDPAEILALS AGTNESIAVN LPVDAWQGPS FPTLLRLVKQ LLPKIVISVD  300
HGFGRNDLPF SHHFLHALQS CAIFLDSIDA AGIDLDVVNK IEKFVLQPKI ENCINRHHCA  360
AEKILPWPTQ FESAGFKPVQ FSSFTEMQAE CLLKRLQVKG FHVEKRQASL YLHWKRGELA  420
SVSVWKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2410542637375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583979.10.0scarecrow-like protein 6
TrEMBLA0A2I0VK350.0A0A2I0VK35_9ASPA; Scarecrow-like protein 6
STRINGXP_008794809.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-92GRAS family protein