PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PEQU_14392

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 312aa MW: 34343.7 Da PI: 6.6352

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_14392	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.7	4e-38	51	149	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkC++dC+lap fpae++ +f n+h+lFG+sn+lk+lk+++e++r++am+s+++++++ra+dP G++++il+lq+q+e + ++l+++ + PEQU_14392 51 ACAACKYQRRKCSPDCTLAPFFPAEKHLQFINAHRLFGVSNILKILKSVDESHRQEAMNSIIFQSNIRAQDPSGGCYRIILNLQRQIEATYTQLQHVLN 149 7****************************************************************************************9999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.716	50	151	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-36	51	146	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MKPPLPPISI PPPNYAKKQR NRAHPNPPIS SPHSPSPKLN MGPLTSPSSS ACAACKYQRR 60 KCSPDCTLAP FFPAEKHLQF INAHRLFGVS NILKILKSVD ESHRQEAMNS IIFQSNIRAQ 120 DPSGGCYRII LNLQRQIEAT YTQLQHVLNQ VAFLRSQFNP AADGAADIDA IYGLQQPQQH 180 CNNFCFAYDV PKDLQGAHEH GINGHDNVNP IDIGNEELRQ QVLFGIQGKE GREEGVDVRS 240 LADMYGMQHG FGICKEQEDA AQNISIGSTI TGLCSSMAEA KADANIIDEV QEHDLRSAAS 300 FFSLNNCDTQ AI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-23	42	144	2	104	LOB family transfactor Ramosa2.1
5ly0_B	7e-23	42	144	2	104	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020577312.1	0.0	LOB domain-containing protein 35-like
TrEMBL	A0A2I0WKW9	5e-72	A0A2I0WKW9_9ASPA; LOB domain-containing protein 22

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-41	LOB domain-containing protein 22