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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_14326 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 76aa MW: 8650.86 Da PI: 8.2607 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.4 | 4.2e-09 | 2 | 35 | 20 | 56 |
AP2 20 rdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 r p++ r+r +l +f+taeeA a+++a +l+ge PEQU_14326 2 RLPKN---RTRLWLCTFDTAEEASMAYDKAVFRLRGE 35 55543...49*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.5E-16 | 1 | 43 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.787 | 1 | 42 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.61E-16 | 1 | 44 | No hit | No description |
SMART | SM00380 | 4.1E-7 | 1 | 48 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-11 | 2 | 43 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-4 | 7 | 35 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
IRLPKNRTRL WLCTFDTAEE ASMAYDKAVF RLRGEFARQN FPHLRHIGAG AGLHSSIDTK 60 LEEHTEPAEC IIIRGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020579543.1 | 1e-32 | ethylene-responsive transcription factor RAP2-13-like | ||||
Swissprot | Q8H1E4 | 1e-24 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A2I0WFB3 | 1e-26 | A0A2I0WFB3_9ASPA; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A455LAE3 | 3e-28 | A0A455LAE3_9ASPA; DRE-binding DREB-like protein (Fragment) | ||||
TrEMBL | A6YT27 | 1e-26 | A6YT27_9ASPA; DRE-binding protein DREB1 | ||||
STRING | PGSC0003DMT400022023 | 4e-25 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 4e-27 | related to AP2 4 |
Publications ? help Back to Top | |||
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