PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_14326
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 76aa    MW: 8650.86 Da    PI: 8.2607
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_14326genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.44.2e-092352056
         AP2 20 rdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                r p++   r+r +l +f+taeeA  a+++a  +l+ge
  PEQU_14326  2 RLPKN---RTRLWLCTFDTAEEASMAYDKAVFRLRGE 35
                55543...49*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.5E-16143IPR001471AP2/ERF domain
PROSITE profilePS5103212.787142IPR001471AP2/ERF domain
CDDcd000188.61E-16144No hitNo description
SMARTSM003804.1E-7148IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-11243IPR016177DNA-binding domain
PfamPF008471.8E-4735IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
IRLPKNRTRL WLCTFDTAEE ASMAYDKAVF RLRGEFARQN FPHLRHIGAG AGLHSSIDTK  60
LEEHTEPAEC IIIRGS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020579543.11e-32ethylene-responsive transcription factor RAP2-13-like
SwissprotQ8H1E41e-24RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2I0WFB31e-26A0A2I0WFB3_9ASPA; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A455LAE33e-28A0A455LAE3_9ASPA; DRE-binding DREB-like protein (Fragment)
TrEMBLA6YT271e-26A6YT27_9ASPA; DRE-binding protein DREB1
STRINGPGSC0003DMT4000220234e-25(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-27related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]