PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_14300
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 239aa    MW: 27908.4 Da    PI: 6.6087
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_14300genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.7e-18956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed  lv++v+++G  +W+ Ia+  g++Rt+k+c++rw++yl
       PEQU_14300  9 KGPWTEQEDMHLVCYVHLFGESRWDFIAKVSGLNRTGKSCRLRWLNYL 56
                     79********************************************97 PP
2Myb_DNA-binding57.53.1e-1863107248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      gr+T++E++l+v+++ ++G++ W++Iar+++ gRt++++k++w++++
       PEQU_14300  63 GRMTPQEEQLIVELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHK 107
                      89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.773456IPR017930Myb domain
SuperFamilySSF466891.39E-307103IPR009057Homeodomain-like
SMARTSM007174.3E-15858IPR001005SANT/Myb domain
PfamPF002497.6E-17956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-211063IPR009057Homeodomain-like
CDDcd001677.34E-101156No hitNo description
PROSITE profilePS5129425.93257111IPR017930Myb domain
SMARTSM007171.2E-1661109IPR001005SANT/Myb domain
PfamPF002494.7E-1663107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2364110IPR009057Homeodomain-like
CDDcd001673.37E-1164107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAASEEMRKG PWTEQEDMHL VCYVHLFGES RWDFIAKVSG LNRTGKSCRL RWLNYLHPGL  60
KHGRMTPQEE QLIVELHSRW GNRWSRIARK LPGRTDNEIK NYWRTHKRKK AQERQNSHLS  120
PSSSSSSQNP IAMTEAEKKR LEQINHGNSI STSWFDEEDG EVKGYSMDQI WNELAISEIP  180
WLNFEGWKEK INEVEVSEMA SPLWDYSESQ MGKVDGEDLK IISPMPALTI PNYHYGTEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2661111105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-26611124128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020579630.11e-179myb-related protein MYBAS2-like
SwissprotQ53NK68e-75MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A2I0VX781e-131A0A2I0VX78_9ASPA; Myb-related protein MYBAS2
STRINGXP_008788078.15e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.16e-70myb domain protein 48
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]