PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_13937
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 672aa    MW: 76092 Da    PI: 6.326
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_13937genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.3e-07116138427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 ++C ++++ G C  Gd+C+F+Hgp
  PEQU_13937 116 VPCYYYLK-GACLKGDKCPFMHGP 138
                 69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0121946IPR000571Zinc finger, CCCH-type
PfamPF156631.2E-112173No hitNo description
PROSITE profilePS5010310.5492347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.3944975IPR000571Zinc finger, CCCH-type
SMARTSM003560.0395174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004112139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.73E-6112137IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6113138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-4117138IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4117138IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MDSGRSDPRP LTAEEEAIKL NTDCVYFLAS PLTCKKGSEC EYRHSEDARI NPRDCKFWLS  60
GKCLNPKCFF RHPPLDGMIV SPRTTSAKTA AFSHVPPSMP LPMAKFFTYN FGRNNVPCYY  120
YLKGACLKGD KCPFMHGPPS AANPVAKQNV KISAQIAMQL ETSEKDAAKI TERKNQQNLP  180
AALNIGAEKL ANGSPSLREG GRAVESTPGS RNGLARSQTT YDPVRSSSSY SSSQNLHVQP  240
DRQRTEAGEM FMESSEVGYA ELESPLNHQL QSPLRHHHDA QAAEEVFRDS SPGFDVLVDH  300
VVRDTDYFYE QDCFRGVVTE GKRNVNREED YDHYLSDYES STRLDRFRHD RAGDFHYGIE  360
QNGDDWDQQM ISSAFERLSD RPLYTERGSS RRLRSPDEMD ASDLRHRLRK QRRQNGYFSA  420
TSSVHYNEPY GKHDRNMRDG YHAHNSYKKK DNPLHGSAIN TRLRGRITLP KQPCPEIRSD  480
LPVRPSGKYR SLGQRLGWRP TAESFANPRY FGRQQKSRDA VDLLDFIGPR RLEELKGAKA  540
DRNSQGHSRL RDSEASVEFE GPKPLSILLK RKRESLSENH AISGGCNDRV TAEDEQINYE  600
QKDAGDETVA RDAMEDGEEP DYSDQKDGEY YCATVEGGDS KREDDYVGGL DADLDPEEDE  660
DDFAKKIGLI FT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020593725.10.0zinc finger CCCH domain-containing protein 32-like
TrEMBLA0A2I0WJP40.0A0A2I0WJP4_9ASPA; Zinc finger CCCH domain-containing protein 32
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241