![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_13748 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 258aa MW: 28274.3 Da PI: 8.7858 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127 | 5.6e-40 | 45 | 105 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++l+cprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+ss PEQU_13748 45 PEQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKNKRSS 105 78999*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-28 | 36 | 99 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-33 | 47 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.609 | 49 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 51 | 87 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MEISNGHHQV MATHQHDHEV LKLPKPSSSP THHLHQQEKK SRPQPEQSLR CPRCDSTNTK 60 FCYYNNYSLS QPRYFCKSCR RYWTKGGSLR NVPVGGGCRK NKRSSPSSST SSKKLGLQHH 120 QDINHSSLLI SSMPLPPPLN YDPSDLTLAF SSFHNHDTFL LGTPNSNPNP NPNASTGVGL 180 HSFYYGFSGG ADDVRGMLPF DSTAVAAETV MVGNFDPASN VNSTSTSHGS LGMESGRDYW 240 SGVGSNSSWH GLINSSLL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:30626969}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By cytokinin in procambium (PubMed:30626969). Induced by the transcription factor MONOPTEROS (MP) in cells relevant for root initiation, and later in vascular tissues and hypophysis (PubMed:20220754). {ECO:0000269|PubMed:20220754, ECO:0000269|PubMed:30626969}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020571739.1 | 0.0 | dof zinc finger protein DOF3.1-like | ||||
Swissprot | Q84TE9 | 6e-41 | DOF53_ARATH; Dof zinc finger protein DOF5.3 | ||||
TrEMBL | A0A2I0X8M4 | 1e-114 | A0A2I0X8M4_9ASPA; Dof zinc finger protein DOF5.3 | ||||
STRING | XP_008789033.1 | 6e-69 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60200.1 | 4e-38 | TARGET OF MONOPTEROS 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|