PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_13628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 102aa MW: 11601.5 Da PI: 10.3154 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.1 | 1.1e-11 | 25 | 65 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq PEQU_13628 25 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 65 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-15 | 14 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.326 | 15 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.3E-14 | 20 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.6E-12 | 21 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.80E-11 | 24 | 69 | No hit | No description |
Pfam | PF00010 | 4.6E-9 | 25 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 102 aa Download sequence Send to blast |
MSRNTNETIR AGRGSATDPQ SLYARKRRER INERLKILQN LVPNGTKVDI STMLEEAVQY 60 VKFLQVQIKL LSSNELWMYA PIAYNGMNIG IDLMMSPSLK IG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020579111.1 | 7e-68 | transcription factor bHLH84-like | ||||
Swissprot | Q7XHI9 | 3e-51 | BH084_ARATH; Transcription factor bHLH84 | ||||
TrEMBL | A0A2I0VEV6 | 1e-53 | A0A2I0VEV6_9ASPA; Transcription factor bHLH84 | ||||
TrEMBL | A0A444EY90 | 1e-54 | A0A444EY90_ENSVE; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P17130_001 | 8e-54 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4310 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-53 | bHLH family protein |