PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PEQU_12753

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 185aa MW: 20355 Da PI: 8.2841

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_12753	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.2e-05	105	127	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cgk F + L H r+H PEQU_12753 105 YGCSICGKNFASGQALSGHKRLH 127 67*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.5E-6	55	78	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.96E-7	101	128	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-5	101	127	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.468	105	127	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.5E-8	105	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	107	127	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MIPSVPKFDF GINEHEKIQS FPSESEIFLK LKKSKPSSHR KDLHYIASGI EKKSRYNCKT 60 CGRTFPTCQA LGGRRASYMR IKFCCFSEVL ATKKLNIQNH GSKFYGCSIC GKNFASGQAL 120 SGHKRLHLVA ADNAASASAE SVQASAAVNA NMEQMSSFFG TLDLNLSAME DESNGDYDDM 180 TEDSI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020572968.1	1e-124	zinc finger protein ZAT9-like
TrEMBL	A0A2I0WTX2	2e-44	A0A2I0WTX2_9ASPA; Zinc finger protein ZAT1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3861	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-16	C2H2 family protein