PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_12751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 234aa MW: 26464.4 Da PI: 8.2844 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.9 | 8.3e-06 | 1 | 21 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg+sF+++ L H+r H PEQU_12751 1 CNVCGRSFPTRRALGGHMRIH 21 *******************99 PP | |||||||
2 | zf-C2H2 | 18.2 | 6.6e-06 | 55 | 75 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg+ F+++s+L +H + H PEQU_12751 55 CSKCGEKFRSWSSLFNHTKFH 75 ******************998 PP | |||||||
3 | zf-C2H2 | 14.5 | 0.0001 | 209 | 231 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ Cg++F++ L H +H PEQU_12751 209 YNCKTCGRTFPTYQALGGHRARH 231 89**************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 1 | 21 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.8E-6 | 1 | 21 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 1 | 21 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.42E-9 | 1 | 21 | No hit | No description |
SMART | SM00355 | 2.2 | 1 | 21 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.907 | 1 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.42E-9 | 48 | 75 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 53 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1 | 53 | 75 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.61E-5 | 206 | 232 | No hit | No description |
Pfam | PF13912 | 1.4E-12 | 208 | 233 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.014 | 209 | 234 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.048 | 209 | 231 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 211 | 231 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
CNVCGRSFPT RRALGGHMRI HLLPNSDKEP MSRYGFRVNP RKTWKLMENE NDMLCSKCGE 60 KFRSWSSLFN HTKFHSETEG DQLREEDEDF EEKNMNSNRN GSYEEGGDGI ETQSDSEVNA 120 MERSGSLGSS IAYEIEQTAG AFCLMMLSRG AGSVTDSSDK ASVVTDDEVE KRKSNSVSEF 180 SLKLRKSKAS SRRKDLHYVA SGIEKQSRYN CKTCGRTFPT YQALGGHRAR HMRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020572963.1 | 1e-166 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A2I0WTX2 | 5e-63 | A0A2I0WTX2_9ASPA; Zinc finger protein ZAT1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3861 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 1e-12 | C2H2-like zinc finger protein |