PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12439
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 463aa    MW: 49675 Da    PI: 8.4918
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12439genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-094773127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C +f+rtG C y +rC+++H++
  PEQU_12439 47 PGEPDCAYFMRTGACGYRERCRYNHPR 73
                5789*********************96 PP
2zf-CCCH39.96.9e-1396120327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C+++++tGtCk+G++Ck++H++
  PEQU_12439  96 QPVCQYYMKTGTCKFGSSCKYHHPQ 120
                 689********************97 PP
3zf-CCCH406.3e-13140165227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++++tG+Ck+G++CkF+H++
  PEQU_12439 140 GEKECSYYMKTGQCKFGSTCKFHHPQ 165
                 7899********************97 PP
4zf-CCCH39.59.6e-13298324127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+f++rtG Ck+G++Ck++H+p
  PEQU_12439 298 PGQPECQFYMRTGDCKFGATCKYHHPP 324
                 5789*********************97 PP
5zf-CCCH322.1e-10347370427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  lC ++a+ G Ck+G++CkF H++
  PEQU_12439 347 QLCAYYAQHGVCKFGPTCKFDHSM 370
                 69********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8964674IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-44673IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-64873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-55174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.71393121IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-793120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-795120IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-1096120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-598119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.572138166IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6138165IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-6140166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4144164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694297325IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6297324IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5301324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4303323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742343371IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5343370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6345373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5347370IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-8347369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEPYGRSPAG EGRRPDPDTG LQESMWRLGL GGSSASAGGD FLYPERPGEP DCAYFMRTGA  60
CGYRERCRYN HPRDRGVVGG EVFWPGAREY PERVGQPVCQ YYMKTGTCKF GSSCKYHHPQ  120
GGGPVQSVSL NYYGYPLRPG EKECSYYMKT GQCKFGSTCK FHHPQPSGSS LPTSAPIFYP  180
TVQPPSAPSA PSAQQYPQVG GWQIGRSALT GAYMQGSYGP MVLSPGVVPV PGWSPYLPPL  240
AQTVSPTAQQ SVQAGPSYGP ASQLSPSAPA YPGPYSPVSS TIGPSSSSQK DHPFPERPGQ  300
PECQFYMRTG DCKFGATCKY HHPPDWNIPK TNCILSPIGL PLRPGAQLCA YYAQHGVCKF  360
GPTCKFDHSM GTLSYSPSAS SLVDMPVAPY PIGMSLPTLA PSSSSTELRP EFLHGKDPFL  420
TQTSSDDFQA GSVGPLLAKG RFLPHALMKS SSQMPASTSS ISK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580668.10.0zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW21e-161C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A2I0VT750.0A0A2I0VT75_9ASPA; Zinc finger CCCH domain-containing protein 6
STRINGXP_008796231.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-133C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]