PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12284
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 491aa    MW: 55095.8 Da    PI: 8.2969
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12284genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH551.5e-17300346455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  Er+RRdriN+++  L+el+P++     +K +Ka++L +A+eY+ksLq
  PEQU_12284 300 VHNLSERKRRDRINEKMKALQELIPHC-----TKTDKASMLDEAIEYLKSLQ 346
                 6**************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.64E-18291350No hitNo description
SuperFamilySSF474595.76E-21293359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.666296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-15300346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-21300354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-20302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MARHRNALFL PNQEFTELQW KNENVQTHHS TAPRKFPTGI NEVKEDPKPV GGSNPHPSAM  60
EDEIASLFQY HPYEYLEKEF GCDFLCEFPN PQTISADKLN KSINNEGNTV PRFNLYHNQN  120
RFSPPKSHPY DSVHQYVCPE SSSGTVDFPH FSKTEKFGLA NRLQKKIHSG GGESSSMMTT  180
ESSICGSNRV QNRVSLTNSL SNSAIKTGLP PRKFKKDMEN SFLSERMKTD TFEITGTSSS  240
GGSGVSTRPT PQEVNNQNYK RKGIEVEESC SLSELQEGDY ESADGKKPAQ RSRRTRAAEV  300
HNLSERKRRD RINEKMKALQ ELIPHCTKTD KASMLDEAIE YLKSLQQQVQ FLWMGSGMAT  360
MMFPSIQNFM AQMSMGIGRG AVPTLNNLLQ LPRVPVLNHQ PMPSVLPANQ IPMCPQSISH  420
LRFPNQIHNP QIPESFPPHF GFHHMQPSPQ AMNLYGYGSQ SAQQNQMAAA NRSSNMPTDG  480
LPPDNLQNGS N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304309ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020586382.10.0transcription factor PIF4-like isoform X1
TrEMBLA0A2H3ZCM11e-121A0A2H3ZCM1_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X8
TrEMBLA0A2H3ZCM61e-121A0A2H3ZCM6_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X5
TrEMBLA0A2H3ZCM91e-121A0A2H3ZCM9_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
TrEMBLA0A2H3ZCN91e-121A0A2H3ZCN9_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X6
TrEMBLA0A2H3ZDB81e-121A0A2H3ZDB8_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
TrEMBLA0A3Q0HQG31e-121A0A3Q0HQG3_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X7
STRINGXP_008811817.11e-122(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-34phytochrome interacting factor 3-like 5