PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_12153

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 597aa MW: 66834.1 Da PI: 10.0448

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_12153	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	62	81	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+Fs++ L H+r PEQU_12153 62 PCTECGKRFSSWKALFGHMR 81 5******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.63E-5	60	85	No hit	No description
PROSITE profile	PS50157	9.827	61	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0044	61	83	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.8E-8	63	85	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.1E-4	63	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence Send to blast
MDASHSNAPS PPPAPPFPPP LPQPLFTPSF HPRRFKPSKL LASKPRGKRK PDYSSQPNVP 60 PPCTECGKRF SSWKALFGHM RCHPERGWRG INPPRQPQQS PRSQFTDEEY QVAATLLLLA 120 NGPPLETPSG KLSGAVVIRS LPSSSLDGST RRKKGRHFGT RFSPSSSSTS FGCSQDPDCF 180 LLDLNMPPPL EAAGHSGVGI KARDLSTRKI WVCLQPYVPL PFSPFRQKHG RYRETIRAIW 240 EAITKTSETY LFLLPGSFYP KPLREVCFIR LLLSPPSRAS ASLNPVNPSS NGIYEILDLW 300 QSGGKTGFKN RFLQKSLFSL ARAISEDGWC SGRILPPDFS PHNDGESISE TAKLSGSKRE 360 QPCSPSTHPQ QHSIYSGHLV YVRRKLDVEP SKLSIENVES ADPPCLSNYW KEQSSETKSP 420 KEEETKLSGS STRFSSPSSF ISPLRPEPLP GSWKPGNLIT NHNIVSPATE TETHSQGEGY 480 WKERFVRLQT FLKNCDQSNQ EKYIQSLRSL SAAGRSKHAV ELERRAIQLL LDEDKLTTQQ 540 LPQKAAAQKL LRINWLSVYF LQFENNCVAA VSRQMIIVLL YSNSFCKRTV IPIYFIL

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence Send to blast

MDASHSNAPS PPPAPPFPPP LPQPLFTPSF HPRRFKPSKL LASKPRGKRK PDYSSQPNVP  60
PPCTECGKRF SSWKALFGHM RCHPERGWRG INPPRQPQQS PRSQFTDEEY QVAATLLLLA  120
NGPPLETPSG KLSGAVVIRS LPSSSLDGST RRKKGRHFGT RFSPSSSSTS FGCSQDPDCF  180
LLDLNMPPPL EAAGHSGVGI KARDLSTRKI WVCLQPYVPL PFSPFRQKHG RYRETIRAIW  240
EAITKTSETY LFLLPGSFYP KPLREVCFIR LLLSPPSRAS ASLNPVNPSS NGIYEILDLW  300
QSGGKTGFKN RFLQKSLFSL ARAISEDGWC SGRILPPDFS PHNDGESISE TAKLSGSKRE  360
QPCSPSTHPQ QHSIYSGHLV YVRRKLDVEP SKLSIENVES ADPPCLSNYW KEQSSETKSP  420
KEEETKLSGS STRFSSPSSF ISPLRPEPLP GSWKPGNLIT NHNIVSPATE TETHSQGEGY  480
WKERFVRLQT FLKNCDQSNQ EKYIQSLRSL SAAGRSKHAV ELERRAIQLL LDEDKLTTQQ  540
LPQKAAAQKL LRINWLSVYF LQFENNCVAA VSRQMIIVLL YSNSFCKRTV IPIYFIL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11612	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	1e-17	C2H2-like zinc finger protein