PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12111
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 281aa    MW: 30826.1 Da    PI: 8.5017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12111genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05253275223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp C+k F+++ +L+ H  + H
  PEQU_12111 253 VCPRCSKAFRDPVLLVEHVEKdH 275
                 7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183106.54E-13752No hitNo description
PROSITE profilePS510398.2071059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.0E-111152IPR000058Zinc finger, AN1-type
SMARTSM001540.00321352IPR000058Zinc finger, AN1-type
PfamPF014283.1E-141351IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.23E-960142No hitNo description
Gene3DG3DSA:4.10.1110.102.1E-1091143IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.70598146IPR000058Zinc finger, AN1-type
SMARTSM001540.095101142IPR000058Zinc finger, AN1-type
PfamPF014284.3E-8101139IPR000058Zinc finger, AN1-type
SMARTSM003552.8222245IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224245IPR007087Zinc finger, C2H2
SMARTSM0035513252275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280254275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGTPAFPNLG KHCSVEDCKL IDFLPFTCDR CDKVFCLQHR SYAKHTCPNA NQTDVTVLIC  60
PLCAQSVRLV PNEDPNITWD LHVNGNCDPS NYQKTTKKKR CPVPGCKEIL VFSNTIRCKD  120
CTQEHCLRHR FGPDHNCVGP RKPDTGLLFL GGLRRNQNGN SKPNPTSNGS SKWSSSILNA  180
ASSIRASAEA GMQRLGIATN EALRKAKDGT GQGSSGSGDL VERCIRCEAR FTNVAALIEH  240
VEKAHPSRVI VDVCPRCSKA FRDPVLLVEH VEKDHGGFSK S
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580052.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-138SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A2I0WLE41e-177A0A2I0WLE4_9ASPA; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
STRINGPavir.J03938.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-106C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]