PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_12064
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 319aa    MW: 34534.8 Da    PI: 6.2595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_12064genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09166210554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P+       K + a++L + v+Y+k L
  PEQU_12064 166 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEIVDYVKFL 210
                 99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-15159220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.221161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-15163221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.75E-11165215No hitNo description
PfamPF000109.3E-7166210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MANPPQPPPD GIADDFFEQI FSMPGYTSGD ASLAGGDGSS VPGMVQQFNS GDVSSPRNFS  60
VFPLGLSLEQ GRTGFAVAEE GSCSGVVGKR LREGLEAKTS SDAERDPIQL PSLFPPFGQV  120
QSHQIRHNSP QILHGQALQA QVASASQVPA PRPRVRARRG QATDPHSIAE RLRRERIAER  180
MRALQELVPN TNKTDRAAML DEIVDYVKFL RLQVKVLSMS RLGGAGAVAQ LVADIPLSQT  240
EGDSSSDGRS KQQIWEKWST DGTERQVAKL MEEDVGAAMQ FLQSKALCMM PISLAAAIYH  300
TQHQPENPSV KNEPNTPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580085.10.0transcription factor UNE12
SwissprotO227682e-86UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2I0WHB10.0A0A2I0WHB1_9ASPA; Transcription factor UNE12
STRINGXP_010246319.11e-130(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.22e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]