PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PEQU_12050

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 239aa MW: 25197.5 Da PI: 7.6455

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_12050	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ CgksF++ L H+ +H PEQU_12050 83 HPCSVCGKSFPSYQALGGHMASH 105 78******************999 PP
2	zf-C2H2	11.9	0.00068	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k+F++ L H r+H PEQU_12050 136 HQCLICLKTFPTGQALGGHKRRH 158 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.699	83	110	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.6E-14	83	107	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.65E-8	83	158	No hit	No description
SMART	SM00355	0.0018	83	105	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.9E-11	135	160	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.45	136	158	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	138	158	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MAIESLKAAL PPPSPTPAYS STSSDESHLL HVESWTKRKR SKRHPRFFDH PPSEEEYLAF 60 CLLMLSQPPP PYLGVPPLQK MDHPCSVCGK SFPSYQALGG HMASHRKPLP SAAAAGDSGS 120 PAASMVSSSS ANGKVHQCLI CLKTFPTGQA LGGHKRRHYD GTIGSAVGAG SGTGTSGGGA 180 SSASSEAASG GQRGFGLDLN MPPMIEFAFD VSRQFLEADE EDEVQSPLPF KKPHLLLMG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020676776.1	5e-94	zinc finger protein ZAT10-like
TrEMBL	A0A2I0WHA4	1e-92	A0A2I0WHA4_9ASPA; Zinc finger protein ZAT10
STRING	XP_008792675.1	3e-69	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1022	36	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	3e-38	salt tolerance zinc finger