PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 219aa MW: 23970.2 Da PI: 9.3948

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_11952	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.9e-06	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PEQU_11952 20 FVCEICNKGFQRDQNLQLHRRGH 42 89*******************88 PP
2	zf-C2H2	14.9	7.7e-05	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC Cgk++ +s++k H +t+ PEQU_11952 98 WKCDRCGKRYAVNSDYKAHSKTC 120 58*****************9998 PP
3	zf-C2H2	10.8	0.0016	128	146	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + PEQU_11952 128 DCGTLFSRKDSFVTHRAFC 146 8**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.7E-6	19	42	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.05E-9	19	42	No hit	No description
Pfam	PF12171	2.8E-5	20	42	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	20	42	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	20	42	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	22	42	IPR007087	Zinc finger, C2H2
SMART	SM00355	65	63	93	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.3E-5	86	119	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.05E-9	93	118	No hit	No description
SMART	SM00355	150	98	118	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
DPDAEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RQPGGSPARK 60 RVYVCPEPNC VHHDPARALG DLTGIKKHFS RKHGEKKWKC DRCGKRYAVN SDYKAHSKTC 120 GTREYRCDCG TLFSRKDSFV THRAFCDALM QEAAAPAADS VSNGSDEKAA LNLWVNRESQ 180 PPPSAGAVAG AGISATAVVQ KAGGRDGGAD VLIVVFDVI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-33	94	163	3	72	Zinc finger protein JACKDAW
5b3h_F	9e-33	94	163	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020578849.1	1e-164	protein indeterminate-domain 9-like
Swissprot	O22759	1e-94	IDD12_ARATH; Protein indeterminate-domain 12
Swissprot	Q9LVQ7	4e-94	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2I0BGI7	1e-110	A0A2I0BGI7_9ASPA; Zinc finger protein MAGPIE
STRING	ERN15313	2e-98	(Amborella trichopoda)
STRING	XP_008776861.1	3e-98	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-95	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]