PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 532aa MW: 59363.3 Da PI: 6.3307

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_11570	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	300.3	4.7e-92	122	531	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshltaNq 100 +lLl+cA+av+s+d +++q+l++ l+elasp+gd q+la+yf++AL arl++s++++ ++l++ ++++++ +++ l f+e+sP+ f+hl+aN PEQU_11570 122 DLLLDCARAVASRDSSRVQQLMWMLNELASPYGDLDQKLAFYFLQALFARLTSSGPRTLRTLSSASDRSTSFDSTRRNA-LrFQELSPWSSFGHLAANG 219 79**********************************************************99888865544333333.35************* PP GRAS 101 aIleavege...ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvl..vakrledle 190 aIle++ ++ +r+Hi+D++ + ++QWp+Ll+aLa+R+ e++p+l iT+v +++s+ ++ ++e+ r++kfA+ + vpf+f+v+ +++l++l+ PEQU_11570 220 AILESFLHSsppTRLHILDLSTTFCTQWPTLLEALATRSaadEDTPHLSITTVIPSTSQtARRVMREISARMEKFARLMAVPFRFSVVhhPHSDLSTLD 318 **9998999**********************98889****99988888999********************943345899999 PP GRAS 191 leeL....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.....nsesFlerflealeyysalfdsleaklprese 280 l++L + +p +laVn+v +lh ++ +++ +rd +L + sl+P++v+vve+ea++ ++e+Fl++f eal+++sa f++le+++p++s+ PEQU_11570 319 LDTLishdSSSPAATLAVNCVNSLHGVP----PSARRRDILLAKISSLRPRIVTVVEEEAELefdeeDEERFLKGFREALRFFSAYFETLEESFPKTSN 413 9999665555559**********9....55556899***************765321134569************************ PP GRAS 281 erikvErellgreivnvvacegaerrerhetl......ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.....ee.............. 354 er +Er gr+ v++vac +++ er+et+ + W++r+++aGF+p+ +s++ a++ ++llr++k +g+++ ee PEQU_11570 414 ERLALERG-AGRAMVDLVACPADQSAERRETAagggggGGWSRRMRMAGFSPLGFSDDLADDLRALLRRYK-EGWSMRaavgtEEaeestssggggggr 510 ****.*****************9733333357***************************.666665335552266789999999998 PP GRAS 355 .sgslvlgWkdrpLvsvSaWr 374 + ++l+Wk++++v+vSaW+ PEQU_11570 511 gGAGMFLTWKEEAVVWVSAWK 531 777888************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.571	94	492	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-89	122	531	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MDTLFRLVSL HPSDDQNQHQ QSSFNSSRTS SSSRSSLHPP YHQYLPSTSY FELSQEEECC 60 FINPHHPSPY FYNKNSNFFM DEDFSSSSSS SRHFQQPARP PHHLPPIPDL FSDPNRRCWA 120 SDLLLDCARA VASRDSSRVQ QLMWMLNELA SPYGDLDQKL AFYFLQALFA RLTSSGPRTL 180 RTLSSASDRS TSFDSTRRNA LRFQELSPWS SFGHLAANGA ILESFLHSSP PTRLHILDLS 240 TTFCTQWPTL LEALATRSAA DEDTPHLSIT TVIPSTSQTA RRVMREISAR MEKFARLMAV 300 PFRFSVVHHP HSDLSTLDLD TLISHDSSSP AATLAVNCVN SLHGVPPSAR RRDILLAKIS 360 SLRPRIVTVV EEEAELEFDE EDEERFLKGF REALRFFSAY FETLEESFPK TSNERLALER 420 GAGRAMVDLV ACPADQSAER RETAAGGGGG GGWSRRMRMA GFSPLGFSDD LADDLRALLR 480 RYKEGWSMRA AVGTEEAEES TSSGGGGGGR GGAGMFLTWK EEAVVWVSAW KV

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MDTLFRLVSL HPSDDQNQHQ QSSFNSSRTS SSSRSSLHPP YHQYLPSTSY FELSQEEECC  60
FINPHHPSPY FYNKNSNFFM DEDFSSSSSS SRHFQQPARP PHHLPPIPDL FSDPNRRCWA  120
SDLLLDCARA VASRDSSRVQ QLMWMLNELA SPYGDLDQKL AFYFLQALFA RLTSSGPRTL  180
RTLSSASDRS TSFDSTRRNA LRFQELSPWS SFGHLAANGA ILESFLHSSP PTRLHILDLS  240
TTFCTQWPTL LEALATRSAA DEDTPHLSIT TVIPSTSQTA RRVMREISAR MEKFARLMAV  300
PFRFSVVHHP HSDLSTLDLD TLISHDSSSP AATLAVNCVN SLHGVPPSAR RRDILLAKIS  360
SLRPRIVTVV EEEAELEFDE EDEERFLKGF REALRFFSAY FETLEESFPK TSNERLALER  420
GAGRAMVDLV ACPADQSAER RETAAGGGGG GGWSRRMRMA GFSPLGFSDD LADDLRALLR  480
RYKEGWSMRA AVGTEEAEES TSSGGGGGGR GGAGMFLTWK EEAVVWVSAW KV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	1e-146	89	531	4	419	Protein SHORT-ROOT
5b3h_E	1e-146	89	531	4	419	Protein SHORT-ROOT
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269\|PubMed:17446396}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020580270.1	0.0	protein SHORT-ROOT 1-like
Swissprot	Q8H2X8	1e-177	SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBL	A0A2I0XIN4	0.0	A0A2I0XIN4_9ASPA; Protein SHORT-ROOT 1
STRING	XP_008787198.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3526	37	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37650.1	1e-108	GRAS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]