PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11548
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 438aa    MW: 47968.5 Da    PI: 5.2818
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11548genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.13e-89504292373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lLl+c +a++s+d +l q+l++ l+++a pdgd++qRl++ f++AL  r +rs+s +++++p+++t ++    ++ +l +f +++P+++f++ +aN 
  PEQU_11548  50 EQLLLHCTHAIESNDSTLSQQLIWVLNNIAPPDGDSTQRLTSAFLRALILRASRSGSPISSSIPSTNTLPSPLRLSAISLAAFIDLTPWHRFGFSAANA 148
                 79**************************************************************999999888888888888***************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl...vakrledlele 192
                 aI+ea+++ + +H +D++ ++ +Q p+L++aLa R+e +p lR+T+ g+  ++       +l e+g+rL +fA++ +v +ef+v+    ++ +e+l +e
  PEQU_11548 149 AIVEAADSFSVLHLVDLSTTHSMQIPTLIEALAVRAERAPFLRLTVSGDGGESpppkLDMSLDELGSRLVSFARSRNVGMEFRVIessSEDGFESL-VE 246
                 **********************************************9996666777677899**********************844222344444.77 PP

        GRAS 193 eL..rvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                 +L  +v +gEal+Vn++++lhr++des+++     r+ +++ ++sl+P++v +v++ead ++ + + r+  a++y +  fd++e+ lp+ s++r+++E+
  PEQU_11548 247 RLraEVASGEALVVNCHMMLHRIPDESAAVGTvsSRTMFMEGLRSLNPNLVLIVDEEADFTAVDVAGRLRAAFNYLWIPFDAVETFLPAGSDHRRTYEA 345
                 77444555******************998766659**************************************************************** PP

        GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 + + ++i+nv+a+eg  r+er e  + W +r+++aGF+ ++++ +aa+++k++l +++  g+ +  +++ lvl+Wk++ +v+++aW
  PEQU_11548 346 A-IFWKIENVIAQEGLGRVERLEPRSVWGQRMRSAGFQGMRFGGEAAAEVKSMLDEHS-AGWGMRRDEDDLVLTWKGHDVVFATAW 429
                 *.99*****************************************************9.78888999999**************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.38123411IPR005202Transcription factor GRAS
PfamPF035141.0E-8650429IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MQFTENTGSV YFAPRSKTTI PTPPLSHHPW PDLPTSVKSL PAMTNASCME QLLLHCTHAI  60
ESNDSTLSQQ LIWVLNNIAP PDGDSTQRLT SAFLRALILR ASRSGSPISS SIPSTNTLPS  120
PLRLSAISLA AFIDLTPWHR FGFSAANAAI VEAADSFSVL HLVDLSTTHS MQIPTLIEAL  180
AVRAERAPFL RLTVSGDGGE SPPPKLDMSL DELGSRLVSF ARSRNVGMEF RVIESSSEDG  240
FESLVERLRA EVASGEALVV NCHMMLHRIP DESAAVGTVS SRTMFMEGLR SLNPNLVLIV  300
DEEADFTAVD VAGRLRAAFN YLWIPFDAVE TFLPAGSDHR RTYEAAIFWK IENVIAQEGL  360
GRVERLEPRS VWGQRMRSAG FQGMRFGGEA AAEVKSMLDE HSAGWGMRRD EDDLVLTWKG  420
HDVVFATAWV PSMSTSTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-51214322421Protein SHORT-ROOT
5b3h_E3e-51214322421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020580214.10.0scarecrow-like protein 32
SwissprotQ9SN221e-151SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2I0VR920.0A0A2I0VR92_9ASPA; Scarecrow-like protein 32
STRINGEOX916400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-152GRAS family protein