 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PEQU_11462 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 244aa MW: 28443.4 Da PI: 8.3464 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PEQU_11462 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 96.3 | 1.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+l+e++s
PEQU_11462 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLFEFCS 59
79***********************************************96 PP
|
| 2 | K-box | 98.4 | 1e-32 | 78 | 173 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
+ + + ++++++++qe+ kLk ++e Lqr+qR+llGedL +L keL+qLe qLe slk+iRs+K++l+l+q+ +l++ke++lqe+n+aLr+kl+e
PEQU_11462 78 TESTVPSKDTQNSYQEYLKLKTKVEYLQRSQRNLLGEDLIELGSKELEQLELQLEMSLKQIRSTKTQLMLDQLCDLKRKEQMLQEANRALRRKLQE 173
344488999************************************************************************************987 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 1.0E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 33.025 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 1.57E-33 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.58E-43 | 2 | 76 | No hit | No description |
| PRINTS | PR00404 | 3.1E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 7.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.1E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.1E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 4.2E-28 | 84 | 172 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 16.174 | 87 | 177 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGRLFEFCSS 60
SSMTKTLERY QKCSYNATES TVPSKDTQNS YQEYLKLKTK VEYLQRSQRN LLGEDLIELG 120
SKELEQLELQ LEMSLKQIRS TKTQLMLDQL CDLKRKEQML QEANRALRRK LQEDEPEIPL 180
ELSWTGGGGN GPCERQQPQS EDFFQPLPSL QIGFSPICID QQLNTELRII IRTUYUWLHF 240
GLDV
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ox0_A | 5e-27 | 75 | 173 | 1 | 103 | Developmental protein SEPALLATA 3 |
| 4ox0_B | 5e-27 | 75 | 173 | 1 | 103 | Developmental protein SEPALLATA 3 |
| 4ox0_C | 5e-27 | 75 | 173 | 1 | 103 | Developmental protein SEPALLATA 3 |
| 4ox0_D | 5e-27 | 75 | 173 | 1 | 103 | Developmental protein SEPALLATA 3 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF673858 | 0.0 | KF673858.1 Phalaenopsis equestris SEPALLATA-like MADS-box protein 2 (SEP2) mRNA, complete cds. |
