PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_11438
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 570aa    MW: 62904 Da    PI: 4.7707
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_11438genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.84.3e-1072095703374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + Ll+cA+ v+s +  l  +++ ++++las  gdp++R+a+yf eAL++rl++      ++ p       +++e    +++f++++P+  f hltaNqa
  PEQU_11438 209 KSLLDCARIVDS-EPDLSAKAIDHIRDLASDVGDPTERVAFYFSEALSSRLTG------STAPDF-----QEEEINLCYRAFNDACPYTMFVHLTANQA 295
                 689*****9998.566667789*******************************......333333.....345777899******************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Ilea+e+++r+HiiDf+i qG+QW+aLlqaLa+Rp ++p ++Ri g+ +++ g   +++l +tg+rL +fA+ l+++fef++ v + ++dl+  ++rv+
  PEQU_11438 296 ILEATESADRIHIIDFGIAQGIQWAALLQALATRPtRKPSRIRISGIPAASLGgsPATSLAATGNRLLDFARILDLDFEFEP-VLNPVHDLTAASFRVE 393
                 ***********************************55566*********9988999**************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 pgEa+aVn+ lql++ll es    ++ ++v++l ks++P vv++ e e+++n+  F+erf +al y++a+f+sle++++r+seer+ +Er++lg++i  
  PEQU_11438 394 PGEAVAVNFTLQLYTLLGESD---EPVNRVIRLAKSVRPIVVTLGEYECSLNRIGFVERFGNALGYFAAVFESLESSMGRDSEERARIERVILGPRILY 489
                 *****************5555...5555*********************************************************************** PP

        GRAS 297 vvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  v  eg + rr r+et+ekWr+++e +G++ vpls++a++qa+lll +++ s  y++ ++s  ++ l W+d pL++vS+Wr
  PEQU_11438 490 TVGPEGGQvRRVRMETKEKWRAAMEGCGLEMVPLSNYAVSQARLLLWNYDySPKYSLLDSSTGFLsLAWEDLPLFTVSSWR 570
                 *****9988*****************************************9999*99877666666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.937181548IPR005202Transcription factor GRAS
PfamPF035141.5E-104209570IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQQQRHQ HQQQNQQPIM PAVDVASSGG DHFVSVPPQW  60
GNQHQQTPIR DHFPFALTEP TFHDPFAAGV LGFPPPPHLD HAPFRISEFD SDEWMDSLIG  120
ESPTGSSEIM ADVWRGSDLP PIFPDAFTSC STAISLPSQA STSDLDRVVF PDSCNIVATH  180
SHSFDPPPPP PPQPKKGSVD SKSPPLLFKS LLDCARIVDS EPDLSAKAID HIRDLASDVG  240
DPTERVAFYF SEALSSRLTG STAPDFQEEE INLCYRAFND ACPYTMFVHL TANQAILEAT  300
ESADRIHIID FGIAQGIQWA ALLQALATRP TRKPSRIRIS GIPAASLGGS PATSLAATGN  360
RLLDFARILD LDFEFEPVLN PVHDLTAASF RVEPGEAVAV NFTLQLYTLL GESDEPVNRV  420
IRLAKSVRPI VVTLGEYECS LNRIGFVERF GNALGYFAAV FESLESSMGR DSEERARIER  480
VILGPRILYT VGPEGGQVRR VRMETKEKWR AAMEGCGLEM VPLSNYAVSQ ARLLLWNYDY  540
SPKYSLLDSS TGFLSLAWED LPLFTVSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1542035701375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591172.10.0scarecrow-like protein 4
SwissprotQ9FL031e-166SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A3G2CI350.0A0A3G2CI35_CYMEN; Scarecrow-like protein 4-like
STRINGXP_008790358.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-162GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]