PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NF-YC

Protein Properties

Length: 260aa MW: 28795.9 Da PI: 6.0179

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_11057	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.1	8.4e-56	81	185	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql +fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdiv PEQU_11057 81 QLLAFWSNQmheIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 179 6789**988889********************************************************************************* PP NF-YC 97 prdelk 102 prdelk PEQU_11057 180 PRDELK 185 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.01E-34	60	175	IPR009072	Histone-fold
Pfam	PF00808	2.2E-21	103	166	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.1E-37	104	181	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEQSSRPPQP LMGIVPGAAQ MAYAAPPYAP PMATGAPPII GAMPSTPPLV GHSPFPTAQH 60 QLSYQQAQQF HHHQQQQQQQ QLLAFWSNQM HEIEQTTDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVIF AKACEMFILE LTLRSWIHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP 180 RDELKEDGLG IPTAALPRMG SPADLVPYYY VPVDQTASPG AAVMYASAPQ GHPMGYVWPQ 240 QAIVQPTLLQ SEQNQMPDGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-59	89	181	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020576658.1	0.0	nuclear transcription factor Y subunit C-2-like
Refseq	XP_020576659.1	0.0	nuclear transcription factor Y subunit C-2-like
Refseq	XP_020576660.1	0.0	nuclear transcription factor Y subunit C-2-like
Refseq	XP_020576662.1	0.0	nuclear transcription factor Y subunit C-2-like
Refseq	XP_020576663.1	0.0	nuclear transcription factor Y subunit C-2-like
Swissprot	Q655V5	1e-85	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A2I0V8H5	1e-126	A0A2I0V8H5_9ASPA; Nuclear transcription factor Y subunit C-2
STRING	XP_008775725.1	1e-107	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2703	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-73	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]