PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_10943

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 408aa MW: 45619.3 Da PI: 9.8513

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_10943	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.7e-06	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PEQU_10943 79 YVCEICNQGFQRDQNLQMHRRRH 101 9*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.55E-5	76	102	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	78	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0052	79	101	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	79	101	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	123	153	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
ALFSSSSHLL LPPFSASLRS LLFSTSRSHP MFTISSSPLP PAQSEPIITK KKRRPAGTPD 60 PDAEVVSLSP RTLLESDRYV CEICNQGFQR DQNLQMHRRR HKVPWKLLKR ESTVEPVAKK 120 RVFVCPEPSC LHHDPCHALG DLVGIKKHFR RKHSANKQWA CDRCCKAYAV HSDYKAHLKT 180 CGTRGHSCDC GRVFSRIFEQ ATTLSSSIHM ILISNRVETF IEHQDSCSTG RRRSEPCTSQ 240 QLTSLSHPIS SPTPSTDTPP APHPPPPPPY PKFAFLSPPS SQNFHLPHLL PPPSTELDLS 300 IGPPLPRRTH IEDKILSAMT ASDEARRQVQ MAEKELAAAQ RIRQQARVEF EKACALRAAA 360 ARQINAILLQ ITCHDCQQRR RSKAAVTTVV DGGDGEQQLW PKVPPFKL

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

ALFSSSSHLL LPPFSASLRS LLFSTSRSHP MFTISSSPLP PAQSEPIITK KKRRPAGTPD  60
PDAEVVSLSP RTLLESDRYV CEICNQGFQR DQNLQMHRRR HKVPWKLLKR ESTVEPVAKK  120
RVFVCPEPSC LHHDPCHALG DLVGIKKHFR RKHSANKQWA CDRCCKAYAV HSDYKAHLKT  180
CGTRGHSCDC GRVFSRIFEQ ATTLSSSIHM ILISNRVETF IEHQDSCSTG RRRSEPCTSQ  240
QLTSLSHPIS SPTPSTDTPP APHPPPPPPY PKFAFLSPPS SQNFHLPHLL PPPSTELDLS  300
IGPPLPRRTH IEDKILSAMT ASDEARRQVQ MAEKELAAAQ RIRQQARVEF EKACALRAAA  360
ARQINAILLQ ITCHDCQQRR RSKAAVTTVV DGGDGEQQLW PKVPPFKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-13	157	196	5	44	Zinc finger protein JACKDAW
5b3h_F	8e-13	157	196	5	44	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	53	KKKRR
2	49	54	KKKRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020576678.1	0.0	protein indeterminate-domain 14-like
Swissprot	Q9C9X7	1e-120	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A2I0XBA6	1e-168	A0A2I0XBA6_9ASPA; Zinc finger protein JACKDAW
STRING	Gorai.005G134600.1	1e-127	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-101	C2H2-like zinc finger protein

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]