PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_10941

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

BBR-BPC

Protein Properties

Length: 283aa MW: 31010.2 Da PI: 10.0123

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_10941	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	279.7	1.4e-85	56	283	63	301
GAGA_bind 63 rdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepq.ledsavelreeeklealpieeaaeeakekkkkkkrqrakkpk 160 rd++ ++ + + k++++ + +++ +++ ++ +++++ + q l++ +++e+ + + p +++++ +++kk+++ +++p PEQU_10941 56 RDTWYHN-----NDDNGKIFHVFTGNHQ--QHSNSYGALIPEATVSSAGPSAHTLQmLQPVDPPTQEKVAVFQDP---DVPQVEAVPSKKRSKGQARPV 144 7777777.....3344566666665554..444455566666666666666555440555555566666666655...444555555555555555555 PP GAGA_bind 161 ekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259 + ++k+ kk +++++++++s r+++ k++d+v+ng++lD s++P+P+C+CtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrK PEQU_10941 145 KDSKQKTAKKAVANREESANSS--GRRRSANKNLDMVINGIDLDLSGIPAPLCTCTGQPQQCYRWGAGGWQSACCTTSMSMYPLPMSTKRRGARIAGRK 241 4444444443444444444444..699********************************************************************** PP GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 mSqgafkk+LekLa+eG d+snp+DLk +WAkHGtnkfvtir PEQU_10941 242 MSQGAFKKVLEKLAGEGQDFSNPIDLKPFWAKHGTNKFVTIR 283 ***************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.6E-100	15	283	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	4.7E-87	53	283	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MPNVGERMTM SFLSDGHGGS YPRRECGIPD SFFPKRAVFS PKGIPELSSM PIDCARDTWY 60 HNNDDNGKIF HVFTGNHQQH SNSYGALIPE ATVSSAGPSA HTLQMLQPVD PPTQEKVAVF 120 QDPDVPQVEA VPSKKRSKGQ ARPVKDSKQK TAKKAVANRE ESANSSGRRR SANKNLDMVI 180 NGIDLDLSGI PAPLCTCTGQ PQQCYRWGAG GWQSACCTTS MSMYPLPMST KRRGARIAGR 240 KMSQGAFKKV LEKLAGEGQD FSNPIDLKPF WAKHGTNKFV TIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020576684.1	0.0	barley B recombinant-like protein A isoform X1
Refseq	XP_020576685.1	0.0	barley B recombinant-like protein A isoform X2
Swissprot	P0DH88	3e-71	BBRA_ORYSJ; Barley B recombinant-like protein A
Swissprot	P0DH89	3e-71	BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBL	A0A2I0XBD4	1e-175	A0A2I0XBD4_9ASPA; Protein Barley B recombinant
STRING	XP_008787890.1	4e-91	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2211	36	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	5e-63	basic pentacysteine 2

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]