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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PEQU_10914 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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| Family | NAC | ||||||||
| Protein Properties | Length: 661aa MW: 76040.1 Da PI: 6.2828 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 181.7 | 1.9e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97
lppGfrFhPtdeelv +yL++k++g+++el evi+evd+yk+ePw+Lp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++v s ++
PEQU_10914 6 LPPGFRFHPTDEELVAYYLNRKINGRTIEL-EVIPEVDLYKCEPWELPdKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATQAGYWKATGKDRKVNS-QK 102
79****************************.99**************96434555777**************************************.99 PP
NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128
++vg+kktLv+y+grap+g++tdWvmheyrl
PEQU_10914 103 RAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133
99***************************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 4.84E-64 | 4 | 156 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 61.547 | 6 | 156 | IPR003441 | NAC domain |
| Pfam | PF02365 | 1.0E-29 | 7 | 133 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 661 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV AYYLNRKING RTIELEVIPE VDLYKCEPWE LPDKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATQAGYWK ATGKDRKVNS QKRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECES SNGLQDAYAL CRVFKKSEPG PKIIEHYGAP CEEHKQWILN 180 DHSSNMTDLS PDGMGDYLDN GGYHFQPSDC LQTMIQSPFD ASNSWMQFLT EEALSSTTAT 240 FQNTSCFSYV PSKVDVALEC ARLQERFPLP SLEVEDYPQL HMTDPKILRT TNYSQHTTNR 300 GDILHEILSV ASASQELINN PNFHEDIWTT RITPHFNEPL SSLNESGNGE GSSRFMAKSH 360 ELDDQSSFVD ISELEDEFKD QKKGKNLRDV KKLGENLIEV NKEVRQKDCS SNPQTEQISD 420 DQETHQGNFT HESTEIDSKP IYSQSQEDDF SIGFINIHQH DFNQYEHHDL NNNGSPSFDV 480 YHEMIQFNQG LLKSSQTVSK TLFHHIAPAN KINIHLNPID FMVGRFDSSE RARSRVSIFE 540 NFKNFFCNKL KKGSTFCRGG ATGMLSLIEL LLASSFYQGG LLEQSNLVME ELPSRVESME 600 AESRKLISYE GRKKADNMKR MKWNEVKRIW IPNIRGKSIS RIFMNGNLLP WVSMLQPSHH 660 S |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 1e-55 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-55 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-55 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-55 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 1e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 1e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 1e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 1e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 1e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 1e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 1e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 1e-55 | 1 | 156 | 12 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-55 | 1 | 156 | 12 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00212 | DAP | Transfer from AT1G65910 | Download |
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| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | EF536093 | 7e-55 | EF536093.1 Vanda dearei clone VD006 microsatellite sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020581711.1 | 0.0 | NAC domain-containing protein 45-like isoform X2 | ||||
| TrEMBL | A0A2I0VCI8 | 0.0 | A0A2I0VCI8_9ASPA; NAC domain-containing protein 78 | ||||
| STRING | XP_008778272.1 | 0.0 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP6624 | 36 | 51 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G65910.1 | 1e-125 | NAC domain containing protein 28 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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