PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PEQU_10664

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB

Protein Properties

Length: 287aa MW: 32951.4 Da PI: 10.3614

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_10664	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3.1e-15	60	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed l+++v++ G+ +W++Ia+++ gR++k+c++rw++ PEQU_10664 60 RGHWRPAEDAMLKKLVALNGPQNWNLIAQKLE-GRSGKSCRLRWFNQ 105 899***************************.*********996 PP
2	Myb_DNA-binding	51	3.3e-16	112	155	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T+eE+++l+ a+k +G++ W+ Iar ++ Rt++ +k++w+ PEQU_10664 112 RNAFTKEEEQRLLVAHKFYGNK-WAFIARLFP-WRTDNAVKNHWHV 155 789*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.005	54	106	IPR017930	Myb domain
SuperFamily	SSF46689	5.62E-26	59	153	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-12	59	108	IPR001005	SANT/Myb domain
Pfam	PF00249	8.8E-15	60	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-24	61	113	IPR009057	Homeodomain-like
CDD	cd00167	7.25E-11	63	104	No hit	No description
PROSITE profile	PS51294	21.772	107	161	IPR017930	Myb domain
SMART	SM00717	1.1E-13	111	159	IPR001005	SANT/Myb domain
Pfam	PF00249	9.1E-14	112	154	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-18	114	159	IPR009057	Homeodomain-like
CDD	cd00167	6.91E-9	114	154	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MGLPLPSPPT LLSFFEKNGK FKESRVPLEQ QDGLFSAGEE YSLDLVSREH VARHSKLSYR 60 GHWRPAEDAM LKKLVALNGP QNWNLIAQKL EGRSGKSCRL RWFNQLDPRI NRNAFTKEEE 120 QRLLVAHKFY GNKWAFIARL FPWRTDNAVK NHWHVIMARR QRERSNDCRR RKKSNLSIDG 180 NNHDSVSACA DLISLRSSFT SDGFFSTCKH LQLPLKDQKP SRYVIGSDGK PVAGRTDLSD 240 NSDLDYESSS TETMKSQNAN NFMLKKTDHK KEKIKLPFID FLGVGAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-28	60	160	4	104	MYB PROTO-ONCOGENE PROTEIN
1h88_C	8e-28	60	160	58	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	8e-28	60	160	58	158	MYB PROTO-ONCOGENE PROTEIN
1mse_C	3e-28	60	160	4	104	C-Myb DNA-Binding Domain
1msf_C	3e-28	60	160	4	104	C-Myb DNA-Binding Domain
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	172	RQRERSNDCRRRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020583083.1	0.0	transcription factor MYB52-like
TrEMBL	A0A2I0VJJ5	1e-122	A0A2I0VJJ5_9ASPA; Transcription factor MYB44
STRING	GSMUA_Achr5P27750_001	7e-78	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP294	38	260

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	5e-65	myb domain protein 105