PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_10510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 125aa MW: 14045.3 Da PI: 8.4723 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53 | 4.5e-17 | 12 | 56 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ie+k r v fskRr g++KKA ELS+L +a++ ++fs gk PEQU_10510 12 KLIESKQSRLVCFSKRRSGLFKKARELSILSGAQIGALVFSYAGK 56 569**************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.521 | 4 | 58 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-22 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.29E-20 | 5 | 63 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 7.36E-24 | 5 | 59 | No hit | No description |
PRINTS | PR00404 | 9.8E-15 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.9E-19 | 14 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-15 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-15 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MAGGGRKKTE LKLIESKQSR LVCFSKRRSG LFKKARELSI LSGAQIGALV FSYAGKAFVS 60 DVAAMDSLLG LEKRCEIYDA VEVNEPPFWW DVPLQGMGSE ELLQLERRML EYGEKKMSGF 120 QQMDC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that prevents vernalization by short periods of cold. Acts as a floral repressor. {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:19139056, ECO:0000269|PubMed:20551443}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Requires EARLY FLOWERING 7 (ELF7) and ELF8 to be expressed. Up-regulated by HUA2. {ECO:0000269|PubMed:15520273, ECO:0000269|PubMed:15659097}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020578255.1 | 1e-86 | agamous-like MADS-box protein AGL31 | ||||
Refseq | XP_020588145.1 | 1e-86 | agamous-like MADS-box protein AGL31 | ||||
Swissprot | Q9FPN7 | 2e-14 | AGL31_ARATH; Agamous-like MADS-box protein AGL31 | ||||
TrEMBL | A0A455LA50 | 2e-36 | A0A455LA50_9ASPA; MADS-box protein-like protein | ||||
STRING | XP_008788342.1 | 5e-17 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65050.2 | 9e-17 | AGAMOUS-like 31 |
Publications ? help Back to Top | |||
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