PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09933
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TALE
Protein Properties Length: 295aa    MW: 33227.2 Da    PI: 5.2624
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09933genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.49.9e-082442772154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp+++++++L +++gL+ +q+ +WF N+R +
  PEQU_09933 244 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 277
                 569*****************************87 PP
2ELK29.51.6e-10198219122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+++++++++E++
  PEQU_09933 198 ELKHELKNGYKEKIVDIREEIL 219
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.3E-203074IPR005540KNOX1
PfamPF037904.1E-183273IPR005540KNOX1
SMARTSM012563.2E-2684139IPR005541KNOX2
PfamPF037911.1E-1988138IPR005541KNOX2
SMARTSM011887.4E-4198219IPR005539ELK domain
PROSITE profilePS512139.69198218IPR005539ELK domain
PfamPF037891.4E-6198219IPR005539ELK domain
PROSITE profilePS5007111.548218281IPR001356Homeobox domain
SuperFamilySSF466893.64E-16220284IPR009057Homeodomain-like
SMARTSM003895.0E-11220285IPR001356Homeobox domain
CDDcd000861.30E-11221282No hitNo description
Gene3DG3DSA:1.10.10.604.0E-25225282IPR009057Homeodomain-like
PfamPF059202.0E-17238277IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
SSDSIIVATA GDEDTPAGSG EAVEGTWQRA RYKAEILAHP LYEQLLSAHV ACLRIATPVD  60
QLPRIDAQLA QSQQVVAKYS VMGGQMMAGD EKELDQFMTH YVLLLCSFKE QLQQHVRVHA  120
MEAVMACWEL EQSLQSLTGV SPGEGTGATM SDDDEDDDQA DGETNFYDGS FDGSDNMGFG  180
PLVPTESERS LMERVRQELK HELKNGYKEK IVDIREEILR KRRAGKLPGD TTSTLKAWWQ  240
SHAKWPYPTE DDKARLVQET GLQLKQINNW FINQRKRNWH SNPSSSSTLK SKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-13221285872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274294RKRNWHSNPSSSSTLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020579391.10.0homeobox protein knotted-1-like 13
SwissprotP480001e-171KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2I0VZM00.0A0A2I0VZM0_9ASPA; Homeobox protein knotted-1-like 3
STRINGGSMUA_Achr7P05170_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-160KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]