PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PEQU_09596

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

bHLH

Protein Properties

Length: 284aa MW: 32531.8 Da PI: 5.2771

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_09596	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	1.9e-12	101	152	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N ++ Lr+l+P++ + ++ + a+i A++++++L+ PEQU_09596 101 QRMTHIAVERNRRKQMNYYLALLRSLMPPS---YVQRGDQASIISGAINFVRELE 152 79**************************...9***************9995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.06E-11	99	156	No hit	No description
SuperFamily	SSF47459	1.57E-15	99	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-12	100	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.735	100	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.2E-10	101	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-8	106	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MALEAVVFPQ NLLSCNVKEF YGLTEEEEEQ AFYGNWEVAY SSLAQGFEEW NTYSSNLTPP 60 RHEFECTANV AAAAGVEEER SGRKKRRRNK TSKNEEEVKN QRMTHIAVER NRRKQMNYYL 120 ALLRSLMPPS YVQRGDQASI ISGAINFVRE LEQFLQFLEV QKHLKQQIKT EEQDVSSPIN 180 PLTNFFTSPQ YTSPPSAAAI EVGIVESHAN LKLLSRRQPK QLPGLQNLQL TILHLNVTSV 240 EPMVLYCFSL KVEDDCRLNS VDEIAAAVHE IVLKNQEEEE ILLR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	112	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020580908.1	0.0	transcription factor bHLH96-like
Swissprot	Q9C7T4	2e-66	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A2I0W467	1e-160	A0A2I0W467_9ASPA; Transcription factor bHLH94
STRING	XP_010272971.1	1e-94	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	3e-62	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]