PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB

Protein Properties

Length: 304aa MW: 34198.4 Da PI: 7.2354

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_09491	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60	5e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+Wk+I+ g+ R+ k+c++rw +yl PEQU_09491 14 KGPWTPEEDIILVSYIQEHGPGNWKAIPTNSGLSRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	48.9	1.5e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E+ l++++ ++lG++ W++Ia++++ Rt++++k++w++++ PEQU_09491 67 RGSFTDQEENLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHM 112 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.938	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	8.07E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	5.4E-16	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-17	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	3.76E-12	16	61	No hit	No description
SMART	SM00717	1.1E-15	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.815	66	116	IPR017930	Myb domain
Pfam	PF00249	1.7E-14	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-24	69	116	IPR009057	Homeodomain-like
CDD	cd00167	4.65E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MGRPPCCDKF GVKKGPWTPE EDIILVSYIQ EHGPGNWKAI PTNSGLSRCS KSCRLRWTNY 60 LRPGIKRGSF TDQEENLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HMKKKLRRME 120 NEDGILPASG FSNYKPMVKG QWERRLQTDI NMAKQALHEA LYMEKPSFLY ESKPSCSSHS 180 CSTPPSSTTY ASSTENISRL LENWIRKTPK NSAKSAQHHV NELVNVGADS TSSDGTITSA 240 ANNHMVSPET SLFQVDSKPS LEERFPLSLI ETWLFDENCY GGGNGSNINV PDLSLDDASH 300 ELFI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-27	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	6e-27	14	116	27	128	MYB TRANSFORMING PROTEIN
1mse_C	4e-27	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	4e-27	14	116	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020580904.1	0.0	myb-related protein 306-like
Swissprot	P81392	1e-106	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A2I0XBX5	1e-141	A0A2I0XBX5_9ASPA; Myb-related protein 306
STRING	XP_010258354.1	1e-123	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	4e-98	myb domain protein 94

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]