PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09454
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HSF
Protein Properties Length: 440aa    MW: 49780.3 Da    PI: 5.139
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09454genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.7e-36121032102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+++++++sws+ g+sf+v++++ f++++LpkyFkh+nf+SFvRQLn+YgF+k++ e+         weF++++F++g+k+ll++i+
    PEQU_09454  12 FLTKTYEMVDDSTTDSVVSWSNAGDSFIVWNTTVFSRDLLPKYFKHNNFSSFVRQLNTYGFRKIDPEQ---------WEFANEEFTRGQKHLLSNIH 99 
                   9***************************************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    PEQU_09454 100 RRKP 103
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.62E-357101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-608101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-388101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-201235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3112101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-205062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
VMEGGSNSPP PFLTKTYEMV DDSTTDSVVS WSNAGDSFIV WNTTVFSRDL LPKYFKHNNF  60
SSFVRQLNTY GFRKIDPEQW EFANEEFTRG QKHLLSNIHR RKPVHSHSLQ AQVGASPSLS  120
EAERYELEGK IERLRRDKSS LVLELNKHIE QQNGVERKML SLEEKMQFLL DRQRDIMEFL  180
SNIVQIPGFL SNIVQQPEFH SKKRRLLIQD SIQDDPEKNQ IYDIQPTTTQ KSETSSAQAF  240
DLVPFEKMES TLNTLESFLR SVTLASTGEV HYDCSTVLPY AVLPTDSARE NVVNSPSSSP  300
KMHPSSPCVG DFRSSLDLTD STSYAENSGV SLSEVPRTLR VNISDIDVNS APAAPDPRLS  360
RDSTNGAGTS VPTGGNDVFW QQFFTETPGS DMQEVQSERK ELGERRTEVS KVEWGNHWWN  420
RKNVDHLAEK IGQLTPAESV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-25210111120Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020571203.10.0heat stress transcription factor A-4b-like
RefseqXP_020571204.10.0heat stress transcription factor A-4b-like
RefseqXP_020571205.10.0heat stress transcription factor A-4b-like
TrEMBLA0A2I0WAG00.0A0A2I0WAG0_9ASPA; Heat stress transcription factor A-4b
STRINGXP_008776668.11e-165(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-78heat shock transcription factor A4A