PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB_related

Protein Properties

Length: 130aa MW: 14723.5 Da PI: 8.8726

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_09423	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	9.3e-16	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l+d vk++G g+W+t+ r ++R++k+c++rw ++l PEQU_09423 42 KGPWTAAEDAVLIDFVKKHGEGNWNTVQRNTWLRRCGKSCRLRWANHL 89 79******************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.573	37	93	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-21	40	92	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-11	41	91	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.45E-24	43	119	IPR009057	Homeodomain-like
CDD	cd00167	4.28E-10	44	89	No hit	No description
Pfam	PF13921	3.4E-13	45	104	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-12	93	124	IPR009057	Homeodomain-like
PROSITE profile	PS51294	8.223	94	130	IPR017930	Myb domain
SMART	SM00717	13	94	130	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MCSAKSDADT EKQPKEQVDS SSNDEDSRSG SPSTREVSVL KKGPWTAAED AVLIDFVKKH 60 GEGNWNTVQR NTWLRRCGKS CRLRWANHLR PELKKGALTP EEEESIIQMH AKFGNKWAQM 120 AARVSIYYLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	1e-19	39	121	1	82	C-Myb DNA-Binding Domain
1msf_C	1e-19	39	121	1	82	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269\|PubMed:9150608}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin in aleurone cells. {ECO:0000269\|PubMed:9150608}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020571067.1	7e-85	transcription factor GAMYB-like
Refseq	XP_020571069.1	7e-85	transcription factor GAMYB-like
Swissprot	A2WW87	4e-50	GAM1_ORYSI; Transcription factor GAMYB
TrEMBL	A0A2I0VLF5	3e-64	A0A2I0VLF5_9ASPA; Transcription factor GAMYB
STRING	BRADI2G53010.1	4e-50	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3947	36	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11440.1	7e-44	myb domain protein 65