PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PEQU_09286

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 433aa MW: 50286.4 Da PI: 7.0167

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_09286	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367.4	2e-112	61	429	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lL++cA+ +sgd+ +a +lL+++s+++sp+gd+ qRla+yf+++L+arla+++se+y++l +++ + +s+ l+a++l+ ++P+ k+++ ++Nq+ PEQU_09286 61 TLLVHCAQTYASGDKPRACELLKQISQHSSPYGDASQRLAHYFANGLKARLAGTGSEVYHSLVSKRRT---VSDMLKAYQLYLACFPFKKITYHLTNQT 156 79**********************************************************999998...************************ PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 Il+ +++++rvHi+Df+i G+QWp+++++L++Rp++pp+lRiTg++ pe++ +e+++etg+rLakf e++gvpfe++v va ++++++e+L++++ PEQU_09286 157 ILDTIQHATRVHILDFGIDFGFQWPSFIKQLSDRPDEPPKLRITGIEIPEPDfgPTERIQETGRRLAKFVERFGVPFEYHV-VAAMFDEVRVEDLHIEE 254 **********************************************9999**********************9.799********** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 +E l+Vn+ ++lh de+v+ + +rd+vL+++++l+P ++v v + ++++ F+ f ea++y+sa+fd+l++++pre+e+r+ vEr l ++++ nv PEQU_09286 255 DELLVVNCLFRLHDPADETVTEHCPRDKVLNTIRELNPAMFVNVVVNGTYGAPFFMSSFHEAMYYFSAVFDMLDSTAPRENEQRMLVERDLYRKRLINV 353 *********************************************************************************************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ceg e rer et+++W+ r+ +aGF+++++s++ +k+a++ +++++ + ++++e+ ++++ gWk+r + +S W+ PEQU_09286 354 ISCEGLE-RERPETYKQWQVRILRAGFEQLSISKELVKKARAGVKTFYHKDFNMDEDGKWMLEGWKGRIFYGLSTWK 429 ***.9***********************************889***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.065	33	409	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-110	61	429	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
ELFDDVLLCS CERFSQVVNV IREKMFKEAG TDSKNSNPNE SDVHRKSSWK KQQKEVVDFN 60 TLLVHCAQTY ASGDKPRACE LLKQISQHSS PYGDASQRLA HYFANGLKAR LAGTGSEVYH 120 SLVSKRRTVS DMLKAYQLYL ACFPFKKITY HLTNQTILDT IQHATRVHIL DFGIDFGFQW 180 PSFIKQLSDR PDEPPKLRIT GIEIPEPDFG PTERIQETGR RLAKFVERFG VPFEYHVVAA 240 MFDEVRVEDL HIEEDELLVV NCLFRLHDPA DETVTEHCPR DKVLNTIREL NPAMFVNVVV 300 NGTYGAPFFM SSFHEAMYYF SAVFDMLDST APRENEQRML VERDLYRKRL INVISCEGLE 360 RERPETYKQW QVRILRAGFE QLSISKELVK KARAGVKTFY HKDFNMDEDG KWMLEGWKGR 420 IFYGLSTWKP TCF

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

ELFDDVLLCS CERFSQVVNV IREKMFKEAG TDSKNSNPNE SDVHRKSSWK KQQKEVVDFN  60
TLLVHCAQTY ASGDKPRACE LLKQISQHSS PYGDASQRLA HYFANGLKAR LAGTGSEVYH  120
SLVSKRRTVS DMLKAYQLYL ACFPFKKITY HLTNQTILDT IQHATRVHIL DFGIDFGFQW  180
PSFIKQLSDR PDEPPKLRIT GIEIPEPDFG PTERIQETGR RLAKFVERFG VPFEYHVVAA  240
MFDEVRVEDL HIEEDELLVV NCLFRLHDPA DETVTEHCPR DKVLNTIREL NPAMFVNVVV  300
NGTYGAPFFM SSFHEAMYYF SAVFDMLDST APRENEQRML VERDLYRKRL INVISCEGLE  360
RERPETYKQW QVRILRAGFE QLSISKELVK KARAGVKTFY HKDFNMDEDG KWMLEGWKGR  420
IFYGLSTWKP TCF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-52	37	430	1	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020571206.1	0.0	scarecrow-like protein 9
Swissprot	O80933	1e-148	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A3G2CI74	0.0	A0A3G2CI74_CYMEN; Scarecrow-like protein 14-like
STRING	XP_008777105.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-151	GRAS family protein