PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PEQU_09203

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 711aa MW: 80730 Da PI: 7.2427

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_09203	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	399.2	4.3e-122	335	706	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+av+++d ++a++lL ++++ +sp gd +qRla++f+ +L+arla+++s++y++l +++t+ +++l+a++l+ ++P+ k+sh+ N PEQU_09203 335 LRTLLIHCAQAVAADDRRNANELLRQIRQYSSPFGDGTQRLAHCFADGLEARLAGTGSQIYHTLVAKRTT---ATDVLKAYQLYLSACPFKKISHFFSN 430 6789***********************************************************99999...99******************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 q+Il+ ++++rvHiiDf+i G+QWp+L+q L+sR++gpp+lRiTg++ p++g +e++eetg+rLa++A++++vpfe+n+ +a+++e++++e+L++ PEQU_09203 431 QTILNVSDKATRVHIIDFGIYFGFQWPCLIQRLSSRTGGPPKLRITGIDVPQPGfrPTERIEETGKRLADYAKSFNVPFEYNA-IASKWETIHVEDLKI 528 *************************************************9*************************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +++E+l+Vn+ ++ +l+de+v ++s+r++vL+++++++P+v+++ + ++++ F++rf eal ++s+lfd+le+++pr++ +r+ +Er l+gre+ PEQU_09203 529 NKDEVLIVNCLYRFRNLVDETVVVDSPRNKVLSIIRKVNPDVFIHGIVNGAYSAPFFVTRFREALFHFSSLFDMLETTVPRDDAQRMLIERDLFGREAL 627 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv++ceg+er+er et+++W+ r +aGF+++pl+ +++k ak ++ ++ + + ++++s +l++gWk+r ++++S W+ PEQU_09203 628 NVISCEGSERVERPETYKQWQVRNLRAGFTQLPLDAEIMKRAKDKVQGCYHRDFVIDQDSRWLLQGWKGRIIYAISTWK 706 **********************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	70.161	309	686	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-119	335	706	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence Send to blast
MFDASHICPA QNNLNEHKFG VAEPNINQSN HASHLLSGSV SVSDGNPTSS SSRSHEGDYP 60 EDSEIFSDIV LSYISRILME EDVDEKINLF NQETSALQAT EKPFYDILGQ QYPPPSLVKP 120 FLHEDNRLES PKETSSSYGV LSGDSCSSGV VDPSWIQDSS EMNQFTFSSS SVGSVDPLDF 180 PNPLIESQPA WQFKKGMEEA QKFLPSESKL IIDLNIKKLS LNNDLKEKSI AFDTEYRVEK 240 EPPTSLIGSR GRKKPQNEDL DLQEGRNIKQ SAKSSDDVVR SEAFDKVLLC QNMKSCQEKK 300 TNDRHVTTQN GAYKSSHNGR KGRSKRQQKK DVVDLRTLLI HCAQAVAADD RRNANELLRQ 360 IRQYSSPFGD GTQRLAHCFA DGLEARLAGT GSQIYHTLVA KRTTATDVLK AYQLYLSACP 420 FKKISHFFSN QTILNVSDKA TRVHIIDFGI YFGFQWPCLI QRLSSRTGGP PKLRITGIDV 480 PQPGFRPTER IEETGKRLAD YAKSFNVPFE YNAIASKWET IHVEDLKINK DEVLIVNCLY 540 RFRNLVDETV VVDSPRNKVL SIIRKVNPDV FIHGIVNGAY SAPFFVTRFR EALFHFSSLF 600 DMLETTVPRD DAQRMLIERD LFGREALNVI SCEGSERVER PETYKQWQVR NLRAGFTQLP 660 LDAEIMKRAK DKVQGCYHRD FVIDQDSRWL LQGWKGRIIY AISTWKPSEK W

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence Send to blast

MFDASHICPA QNNLNEHKFG VAEPNINQSN HASHLLSGSV SVSDGNPTSS SSRSHEGDYP  60
EDSEIFSDIV LSYISRILME EDVDEKINLF NQETSALQAT EKPFYDILGQ QYPPPSLVKP  120
FLHEDNRLES PKETSSSYGV LSGDSCSSGV VDPSWIQDSS EMNQFTFSSS SVGSVDPLDF  180
PNPLIESQPA WQFKKGMEEA QKFLPSESKL IIDLNIKKLS LNNDLKEKSI AFDTEYRVEK  240
EPPTSLIGSR GRKKPQNEDL DLQEGRNIKQ SAKSSDDVVR SEAFDKVLLC QNMKSCQEKK  300
TNDRHVTTQN GAYKSSHNGR KGRSKRQQKK DVVDLRTLLI HCAQAVAADD RRNANELLRQ  360
IRQYSSPFGD GTQRLAHCFA DGLEARLAGT GSQIYHTLVA KRTTATDVLK AYQLYLSACP  420
FKKISHFFSN QTILNVSDKA TRVHIIDFGI YFGFQWPCLI QRLSSRTGGP PKLRITGIDV  480
PQPGFRPTER IEETGKRLAD YAKSFNVPFE YNAIASKWET IHVEDLKINK DEVLIVNCLY  540
RFRNLVDETV VVDSPRNKVL SIIRKVNPDV FIHGIVNGAY SAPFFVTRFR EALFHFSSLF  600
DMLETTVPRD DAQRMLIERD LFGREALNVI SCEGSERVER PETYKQWQVR NLRAGFTQLP  660
LDAEIMKRAK DKVQGCYHRD FVIDQDSRWL LQGWKGRIIY AISTWKPSEK W

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-53	320	707	3	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020577687.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A3G2CI42	0.0	A0A3G2CI42_CYMEN; Scarecrow-like protein 9-like transcript variant X3
STRING	XP_008799752.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein