PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_09194
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 631aa    MW: 70096.5 Da    PI: 8.6997
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_09194genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07533582147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       PEQU_09194 533 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnvKHRTYVDLKDKWKTL 582
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.9E-6354442IPR029071Ubiquitin-related domain
PROSITE profilePS5005310.223354424IPR000626Ubiquitin domain
PROSITE profilePS5129414.487528587IPR017930Myb domain
SMARTSM007171.5E-7532585IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-11533583IPR009057Homeodomain-like
SuperFamilySSF466893.36E-15534613IPR009057Homeodomain-like
CDDcd116601.38E-16534584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0005515Molecular Functionprotein binding
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MVFQKRLDAG FIGCQIPTMP RFPRSARGKR SPQKKAENTQ MHPFDMLATV AGELLAKRES  60
SCSLHKTAEI TTSGNTIKKE QLDHGSPSKS DVFDQGSCDE SSFVARFVSH AENGAASDFA  120
VVKSDMSKKD GFAWESAQSG LKRQQQMLTK TGTLKNDAME IQKLDDPIDL DTKSPALLSS  180
DSSIEIPPFG DYHSAHSSSL HSLRDGMDLI LDRDDDENSS WRTHNSAIYS KPFKPHCKSE  240
RRVRKMSTTN SWKDDGEAMN DGELWHGDEE IKPAFRARNL CYTRRRTQRS SFKRKKLIER  300
ISFSAPDEVL VKDDTKLNSG NPDAELNDEL AFCLIISTLN LFKVLRCSLS FMTVKLSIKS  360
FRVPELSIEI PANATVGSLK RTVMEAVTAV LSGGLRVGVL LEGKKIRDDN KTLLQAGISS  420
KDKLDNLGFA LEPSPTRSPP PPCDSHSCES QPFNKIPDKV TCAPSTQTPP NIPENCTESD  480
HDSVHSPTNP SSSVDQMCDN SKALVPILAG NSEALPVVPF RNSKLSVVVR RIRRPFSVSE  540
VEALVQAVEK LGTGRWRDVK LRAFDNVKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ  600
DLLDRVLSAH AYWGQQQAKS SRLAEPCLVL A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-5153063014112Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020577659.10.0telomere repeat-binding protein 2-like
TrEMBLA0A2I0VXQ50.0A0A2I0VXQ5_9ASPA; Telomere repeat-binding protein 5
STRINGXP_008784600.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5245714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-90TRF-like 2