![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_09157 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 188aa MW: 20589.3 Da PI: 6.2482 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H PEQU_09157 64 FECKTCSRKFTTFQALGGHRASH 86 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.53E-8 | 62 | 130 | No hit | No description |
Pfam | PF13912 | 3.7E-11 | 63 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.118 | 64 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.44 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.0E-10 | 107 | 132 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.912 | 108 | 130 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 108 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 188 aa Download sequence Send to blast |
MSKRFRLISE EEEEEDNMSS TMSLDSFNIA NVLMLLSKSH RAAAGDTFTA FTVAGGEATE 60 EKVFECKTCS RKFTTFQALG GHRASHKKPR VGGGAATSAA VPEKPRAHEC SICGLEFAIG 120 QALGGHMRRH RAVGQSGGRE MEKGSPEIDL NQPPLERGEE EEEEVRRLPK LLGFTLTPAM 180 VDCYPLIY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020577811.1 | 1e-137 | zinc finger protein ZAT12-like | ||||
Swissprot | Q681X4 | 7e-25 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A2I0XIA4 | 2e-88 | A0A2I0XIA4_9ASPA; Zinc finger protein ZAT5 | ||||
STRING | GSMUA_Achr10P03700_001 | 1e-38 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28710.1 | 1e-28 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|