PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08850
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family G2-like
Protein Properties Length: 283aa    MW: 31327.6 Da    PI: 7.8219
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08850genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.32.7e-3185138155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kprl+WtpeLH+rFv+av++L G ++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  PEQU_08850  85 KPRLVWTPELHKRFVDAVAHL-GVKNAVPKTIMQLMNVDGLTRENVASHLQKYRL 138
                 79*******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.43982141IPR017930Myb domain
SuperFamilySSF466895.73E-2183142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-3184142IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-2585138IPR006447Myb domain, plants
PfamPF002491.2E-988137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MREAVEPNWF AQWENELPSP EDLIPLSQSL ITPNLALLFN LSTPNPSSAF PLPPPPEFST  60
ATLSTTPESI STGYADDEPA RALKKPRLVW TPELHKRFVD AVAHLGVKNA VPKTIMQLMN  120
VDGLTRENVA SHLQKYRLYL KRSQGLSSSA SGPAISAADA AMEHLFSSYP IPHPLIRRDG  180
SVQENYMPFL SPPLFQRHQR MSSEAAQNQL FYHRRQMGYF GSVSDFGLLA RGGAERFGFH  240
RMGVMMQPPK ATSLPDSYGA EMDACSGGAG RRVLSLFPTK NED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-3285141157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585843.10.0transcription factor PCL1-like
SwissprotO222101e-48MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A2I0WU521e-122A0A2I0WU52_9ASPA; Two-component response regulator ARR1
STRINGGSMUA_Achr8P05880_0012e-74(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.14e-54G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]