PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08801
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 287aa    MW: 31535.8 Da    PI: 6.3136
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08801genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.5e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v  +G+g+W+ ++++ g++R++k+c++rw +yl
       PEQU_08801 15 KGLWTPEEDAKLLAYVSTHGTGNWTNVPKKAGLKRCGKSCRLRWTNYL 62
                     678*******************************************97 PP
2Myb_DNA-binding48.61.9e-1571111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +T++E+el+v +++  G++ W+ Ia+ ++ gRt++++k++w++
       PEQU_08801  71 FTPQEEELIVALHATIGSR-WSMIANQLP-GRTDNDVKNHWNT 111
                      8******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-25665IPR009057Homeodomain-like
PROSITE profilePS5129425.7841066IPR017930Myb domain
SuperFamilySSF466896.36E-3112109IPR009057Homeodomain-like
SMARTSM007171.8E-151464IPR001005SANT/Myb domain
PfamPF002497.8E-171562IPR001005SANT/Myb domain
CDDcd001678.49E-131862No hitNo description
Gene3DG3DSA:1.10.10.607.6E-2366117IPR009057Homeodomain-like
SMARTSM007171.4E-1267115IPR001005SANT/Myb domain
PROSITE profilePS5129417.52467117IPR017930Myb domain
CDDcd001671.63E-1071113No hitNo description
PfamPF002495.8E-1371111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGIRPPCCDK LNVKKGLWTP EEDAKLLAYV STHGTGNWTN VPKKAGLKRC GKSCRLRWTN  60
YLRPNLKHEG FTPQEEELIV ALHATIGSRW SMIANQLPGR TDNDVKNHWN TKLSKNLALN  120
GIDPVTHRPI SEIKHSITTL HIAGSTAAQP HSSAATTVGV RHHDSPLISL NRDLKKILLS  180
PPIPPPLKLT ASLVHWNIAD QTTASAACDI PPPPHELEWV QFLAEDVFSC LEELDAYPAP  240
SLVAVDAGFD GGEEVADGDA FIDEILDRDR EIMSECFGLV DGHSSLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25151177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585943.10.0myb-related protein 308-like isoform X1
TrEMBLA0A2I0AKU73e-95A0A2I0AKU7_9ASPA; Transcription factor MYB28
STRINGXP_008804161.15e-88(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118743439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-69MYB family protein