PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PEQU_08746

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB_related

Protein Properties

Length: 1548aa MW: 169528 Da PI: 6.4704

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_08746	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.5	1.5e-08	918	958	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT E + l++a + +G++ + ++a+ +g +R++ qck ++ k PEQU_08746 918 WTDKEKLMLIQALNIYGKD-FVKVAQFVG-TRSRDQCKIFYSK 958 ***************99.*****.******99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.54E-12	691	753	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.7E-5	699	752	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.582	703	754	IPR017884	SANT domain
SMART	SM00717	1.1E-7	704	752	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-6	912	958	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.843	913	964	IPR017884	SANT domain
SMART	SM00717	1.7E-8	914	962	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.09E-10	917	961	IPR009057	Homeodomain-like
CDD	cd00167	4.74E-7	918	956	No hit	No description
Pfam	PF00249	8.3E-8	918	957	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1548 aa Download sequence Send to blast
MPSPHTWDRK EPFVKDRKQE RGAGCDAVGG GGGGGVGGGS CSTSRWREPY HGQREFPRAS 60 PRRPSSGHYR HDGGYQQLYS EESSGHGCTP SRSGDRFWQE EDIFRLSSGR CGGKESRGSS 120 RRSPSLDSGG DSARPHLAPP LAAQRSVAVP ITNASSSSLS PIPWKNVLDK SDGVETGQKY 180 DRDHSLGPIA WKPLKWSRPS SVQTPKTGRC EAEDANLEIS APHVKDSPAR SPFTSLLQSD 240 DRAPNKKPRL GWGQGLAKYE KQKIEGSVDV SAHNGSAQST SSAKIVVGDS SPKFSVLPGS 300 MSPATPTSVA CSSSPAATDE KLPIKGLNSE TDRAQCSDSS GLGIHNSPKD ISIKFDQLDA 360 NSISSLALLL SDLLQPEDAC SGDSSFTRNS TINKLLLLKK NISKELEKTE CEIDLFENRL 420 KSIDGDGQIN SFQECSESLA ELSSSDNCIA ASSVSLEGQM AVPRNFSEEQ ATTVKGTFHP 480 SSDGIICVSS QFPSLETENP NSSLDYRTEK EDNSLLDFIM TSNRDAAKKA LEEFDGAIPP 540 WLAQYNFSEL DFSQCKKNYI SIRERLVIKK RVLKFKEHIL ALKYKALHHL WREDLKVLTM 600 RKHQPKSSKR YEVNSRSSHN AIQKHRSSIR SRFALPAENL TLVPSTDVIN FTSKLLLDSQ 660 VRLYRDNLKM PAQIIDENDR RYSKFNSNNG LIEDPVALEK ERVTVNPWMQ EEKEIFLEKL 720 ARCGKDFEKI SSFLTHKTTA DCIEFYYKNH KSESFTEVKK HLKWRKQLQN RQSNTYLITS 780 GARFNRETNT TSLELLGAAS LMASEGNCNR RSSSLKQSGK SGCYDARVSR RSNGSLEKTN 840 SEISGSEREA AAADVLAGIC GALSSDAMSS CITSSVDLPE KFRFASIDCS LTPEGAHTID 900 EEDMCSDDSS DELESADWTD KEKLMLIQAL NIYGKDFVKV AQFVGTRSRD QCKIFYSKAR 960 KCLCLDVIQP GSANEVTPLS DVNGGRSDSD DACAAEIDSA ICSTQSCSKI DADFTQSILE 1020 TCSEGHTQQA DADGPCEQCE IVGSIPGEAE ANLNNKASVL NENKLLIVGG NLEFVKDHGE 1080 ICSFSSRSNE PESSNKSTNE MLLTEKSKSQ TVASASASDE LSKEQNLNQL VEVFDSVGEK 1140 TASVKIEEIV NVGESLMFCP ISYSKGSSCD DGENKNVEYP PSLLSSNFPL HAPLEVPSSL 1200 QNRPQIKIVQ PDSAVSISFN GKDSSISLFN LQDGEKSLQE SVCRDLSPIP LHHPFSNQID 1260 PLLAARGCSM QSLIENHKEL KINRKMIVES SVMANTFSQS NSSSVPGSHN DKCVGEGFLN 1320 SRSEISMVPR PDHKSEQNLT AGSGDQSHRG GDLKLFGQIL THQFSQKSHE SGKVSLSPRQ 1380 NSNATNNSSS TRWKDAAIFA PRPGRNGLVH HLGELPQRSY GFWDGNQIQT GLPSLPEPTI 1440 MLANYPPFSI SKEIIATGNK DDYKQAQNCS LSTEKFLETY PESQKRNGFD SLSGFPHEGR 1500 MMHHLGGVVV GGSGVSDPVA AIQMHYSGRR TKIFSGDLES LTGDTRGR

Sequence ? help Back to Top

Protein Sequence Length: 1548 aa Download sequence Send to blast

MPSPHTWDRK EPFVKDRKQE RGAGCDAVGG GGGGGVGGGS CSTSRWREPY HGQREFPRAS  60
PRRPSSGHYR HDGGYQQLYS EESSGHGCTP SRSGDRFWQE EDIFRLSSGR CGGKESRGSS  120
RRSPSLDSGG DSARPHLAPP LAAQRSVAVP ITNASSSSLS PIPWKNVLDK SDGVETGQKY  180
DRDHSLGPIA WKPLKWSRPS SVQTPKTGRC EAEDANLEIS APHVKDSPAR SPFTSLLQSD  240
DRAPNKKPRL GWGQGLAKYE KQKIEGSVDV SAHNGSAQST SSAKIVVGDS SPKFSVLPGS  300
MSPATPTSVA CSSSPAATDE KLPIKGLNSE TDRAQCSDSS GLGIHNSPKD ISIKFDQLDA  360
NSISSLALLL SDLLQPEDAC SGDSSFTRNS TINKLLLLKK NISKELEKTE CEIDLFENRL  420
KSIDGDGQIN SFQECSESLA ELSSSDNCIA ASSVSLEGQM AVPRNFSEEQ ATTVKGTFHP  480
SSDGIICVSS QFPSLETENP NSSLDYRTEK EDNSLLDFIM TSNRDAAKKA LEEFDGAIPP  540
WLAQYNFSEL DFSQCKKNYI SIRERLVIKK RVLKFKEHIL ALKYKALHHL WREDLKVLTM  600
RKHQPKSSKR YEVNSRSSHN AIQKHRSSIR SRFALPAENL TLVPSTDVIN FTSKLLLDSQ  660
VRLYRDNLKM PAQIIDENDR RYSKFNSNNG LIEDPVALEK ERVTVNPWMQ EEKEIFLEKL  720
ARCGKDFEKI SSFLTHKTTA DCIEFYYKNH KSESFTEVKK HLKWRKQLQN RQSNTYLITS  780
GARFNRETNT TSLELLGAAS LMASEGNCNR RSSSLKQSGK SGCYDARVSR RSNGSLEKTN  840
SEISGSEREA AAADVLAGIC GALSSDAMSS CITSSVDLPE KFRFASIDCS LTPEGAHTID  900
EEDMCSDDSS DELESADWTD KEKLMLIQAL NIYGKDFVKV AQFVGTRSRD QCKIFYSKAR  960
KCLCLDVIQP GSANEVTPLS DVNGGRSDSD DACAAEIDSA ICSTQSCSKI DADFTQSILE  1020
TCSEGHTQQA DADGPCEQCE IVGSIPGEAE ANLNNKASVL NENKLLIVGG NLEFVKDHGE  1080
ICSFSSRSNE PESSNKSTNE MLLTEKSKSQ TVASASASDE LSKEQNLNQL VEVFDSVGEK  1140
TASVKIEEIV NVGESLMFCP ISYSKGSSCD DGENKNVEYP PSLLSSNFPL HAPLEVPSSL  1200
QNRPQIKIVQ PDSAVSISFN GKDSSISLFN LQDGEKSLQE SVCRDLSPIP LHHPFSNQID  1260
PLLAARGCSM QSLIENHKEL KINRKMIVES SVMANTFSQS NSSSVPGSHN DKCVGEGFLN  1320
SRSEISMVPR PDHKSEQNLT AGSGDQSHRG GDLKLFGQIL THQFSQKSHE SGKVSLSPRQ  1380
NSNATNNSSS TRWKDAAIFA PRPGRNGLVH HLGELPQRSY GFWDGNQIQT GLPSLPEPTI  1440
MLANYPPFSI SKEIIATGNK DDYKQAQNCS LSTEKFLETY PESQKRNGFD SLSGFPHEGR  1500
MMHHLGGVVV GGSGVSDPVA AIQMHYSGRR TKIFSGDLES LTGDTRGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-14	670	755	9	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-14	670	755	9	93	NUCLEAR RECEPTOR COREPRESSOR 2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020585955.1	0.0	uncharacterized protein LOC110028446 isoform X1
TrEMBL	A0A2I0VQE9	0.0	A0A2I0VQE9_9ASPA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	3e-99	MYB family protein