PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_08576

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 396aa MW: 44277.9 Da PI: 9.0136

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_08576	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PEQU_08576 59 FVCEICNKGFQRDQNLQLHRRGH 81 89*******************88 PP
2	zf-C2H2	12.3	0.00053	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + PEQU_08576 133 WKCEKCSKKYAVQSDWKAHSKIC 155 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.06E-8	58	81	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-5	58	81	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	59	81	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	6.0E-5	59	81	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	59	81	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.06E-8	128	153	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.5E-4	128	154	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	140	133	153	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MEENMSNLTS ASGDASFSSN PSPMNQQAAK KKRNLPGNPD PEAEVIALSP KTLMATNRFV 60 CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVRKKVY ICPEVTCVHH DPTRALGDLT 120 GIKNSRKHGE KKWKCEKCSK KYAVQSDWKA HSKICGTREY RCDCGTLFSR RDSFITHRAF 180 CDALAEESAR NISTLNPLTN PLLFHPPPPP SFDPSSLPLQ THFPHLIRTI ANETYQTNTC 240 NPNINNNHTL QDLTLKTEQQ QHHIPSWLST TTTSSIYSPV LEQNHFIHDS HQSLPPSYPL 300 PQPHISATAL LQKAAQMGST MSRPSPIHSQ MAGHNNGDLV LPSSPIEKAF VNGSTASNHF 360 LQMMNSFTQA TGYRENEDGS NGGVGGGRKL HEFFLV

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MEENMSNLTS ASGDASFSSN PSPMNQQAAK KKRNLPGNPD PEAEVIALSP KTLMATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVRKKVY ICPEVTCVHH DPTRALGDLT  120
GIKNSRKHGE KKWKCEKCSK KYAVQSDWKA HSKICGTREY RCDCGTLFSR RDSFITHRAF  180
CDALAEESAR NISTLNPLTN PLLFHPPPPP SFDPSSLPLQ THFPHLIRTI ANETYQTNTC  240
NPNINNNHTL QDLTLKTEQQ QHHIPSWLST TTTSSIYSPV LEQNHFIHDS HQSLPPSYPL  300
PQPHISATAL LQKAAQMGST MSRPSPIHSQ MAGHNNGDLV LPSSPIEKAF VNGSTASNHF  360
LQMMNSFTQA TGYRENEDGS NGGVGGGRKL HEFFLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-36	129	196	3	70	Zinc finger protein JACKDAW
5b3h_F	6e-36	129	196	3	70	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	97	KLKQRSNKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020587765.1	0.0	protein indeterminate-domain 11-like
Swissprot	Q9LVQ7	1e-118	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2I0X386	0.0	A0A2I0X386_9ASPA; Zinc finger protein MAGPIE
STRING	XP_008793218.1	1e-146	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-104	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]