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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_08415 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 146aa MW: 16499.1 Da PI: 4.8859 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.7 | 6.1e-29 | 71 | 120 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtpeLH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ PEQU_08415 71 PRLRWTPELHLSFVHAVERLGGHERATPKLVLQMMNVRGLSIAHVKSHLQ 120 8************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-26 | 67 | 120 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-13 | 69 | 121 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.4E-20 | 71 | 121 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-9 | 72 | 120 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MADGGEEDDE DNNGSTTEVL EEGGESYSYN NNSEDDGNNN DGGSSKSMED GEENRDRRSA 60 AVRQYVRSKM PRLRWTPELH LSFVHAVERL GGHERATPKL VLQMMNVRGL SIAHVKSHLQ 120 VKTPTYELIH ENTLLIYISS PKIFFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-18 | 72 | 120 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-18 | 72 | 120 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-18 | 72 | 120 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-18 | 72 | 120 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-18 | 72 | 120 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-18 | 72 | 120 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-18 | 72 | 120 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-18 | 72 | 120 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-18 | 72 | 120 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-18 | 72 | 120 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-18 | 72 | 120 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-18 | 72 | 120 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020572606.1 | 2e-79 | uncharacterized protein LOC110019324 | ||||
TrEMBL | A0A2I0VD15 | 6e-40 | A0A2I0VD15_9ASPA; Myb family transcription factor | ||||
STRING | Aquca_021_00207.1 | 2e-36 | (Aquilegia coerulea) | ||||
STRING | XP_007159455.1 | 4e-36 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4408 | 36 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42660.1 | 6e-32 | G2-like family protein |