PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08353
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 191aa    MW: 20569.1 Da    PI: 11.8495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08353genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1857106255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr ++ +g+Wv+eIr p++   + r++lg+f t+e+Aa+a++ a+++++g
  PEQU_08353  57 LYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 106
                 69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.91E-2856116No hitNo description
SMARTSM003803.5E-3757120IPR001471AP2/ERF domain
PfamPF008479.4E-1357106IPR001471AP2/ERF domain
PROSITE profilePS5103223.19657114IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2157115IPR016177DNA-binding domain
PRINTSPR003671.7E-105869IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3158115IPR001471AP2/ERF domain
PRINTSPR003671.7E-108096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSDQGSPSEQ DSSPSSSWPS SSSSSSNPTP TPTPKHSADP NQSGTEKKSR DRIKHTLYRG  60
VRMRSWGKWV SEIRQPRKKS RIWLGTFPTP EMAARAHDVA ALSIKGSAAI LNFPELAASL  120
PRPATLSPHD VQAAAAKAAN MDRARCRKGG QHGPLAAGET LSGFSAISRR ARGDCGAATP  180
QRRQFSRLRR G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-19541141172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572673.13e-67dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-50DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2I0WAR86e-51A0A2I0WAR8_9ASPA; Dehydration-responsive element-binding protein 3
STRINGXP_010047241.13e-50(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]