PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PEQU_08212

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 295aa MW: 32275 Da PI: 8.5608

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_08212	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C+k+F+++ L H tH PEQU_08212 103 YECDNCKKVFPSHQALGGHRATH 125 99**************9999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.3E-10	103	127	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.367	103	130	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.038	103	125	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.42E-8	103	125	No hit	No description
PROSITE pattern	PS00028	0	105	125	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.42E-8	189	216	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.9E-4	192	217	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.328	194	221	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.5E-13	194	218	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.61	194	216	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	196	216	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MPTYNRELLP WNSHFKPDYS SSSIAAAASG NDDDGRDGLT PPSPPCPSYK GKRIERDREN 60 CGSTDRQTPS RTQEEDVARF LVELSKAFLE RAPVSNQSHP AGYECDNCKK VFPSHQALGG 120 HRATHKKVKG CSAVSLEIRS AGTNNKQIRN QNNNVDNQYN KASSSSENMA LPIVPLAEYP 180 PRRPLSPRKY PKPHICKECL RQFSTGQALG GHMRCHRKPS NITATVTEAA VAVNQTIAAA 240 PTTEVEVGAG SSEVNAVQPR SPTLVPLLSN RSYRNIDLNV EPESSEDMDG SPLRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020572579.1	0.0	zinc finger protein ZAT5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3524	32	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	3e-18	C2H2-like zinc finger protein