PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08134
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 370aa    MW: 43808 Da    PI: 8.8215
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08134genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-052244123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C++Cg + s ks+L++Hi +H
  PEQU_08134 22 YYCEYCGICRSKKSLLRSHILSH 44
                89*******************96 PP
2zf-C2H217.89e-066991123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ Cg sF  + +L++H+r+H
  PEQU_08134 69 HTCEECGASFWKPAHLVQHMRSH 91
                79********************9 PP
3zf-C2H217.21.4e-0597121123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 + Cp  dC   ++rk++L+rH+ +H
  PEQU_08134  97 FACPveDCYFIYRRKDHLNRHLLKH 121
                 78*********************99 PP
4zf-C2H216.91.8e-05126150123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 + Cp  +C+++F+ + n++rH + H
  PEQU_08134 126 FNCPveKCNRTFTFQGNMTRHVNEH 150
                 78*********************96 PP
5zf-C2H212.80.00037163187123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C+   Cgk F   s Lk+H  +H
  PEQU_08134 163 HVCEepGCGKIFMFASKLKKHEDSH 187
                 789999***************9888 PP
6zf-C2H215.16.8e-05254278223
                 EET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                 kC+   C +++s ksnL++H +  H
  PEQU_08134 254 KCSfqGCEQTYSKKSNLNKHVKAvH 278
                 799999**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355102244IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.9E-76988IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00196991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.3786996IPR007087Zinc finger, C2H2
SuperFamilySSF576673.86E-1069121No hitNo description
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-1289123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.5897126IPR007087Zinc finger, C2H2
SMARTSM003550.01897121IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099121IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-6108157No hitNo description
Gene3DG3DSA:3.30.160.606.0E-5124151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.385126156IPR007087Zinc finger, C2H2
SMARTSM003550.13126150IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128151IPR007087Zinc finger, C2H2
SuperFamilySSF576672.28E-5159189No hitNo description
Gene3DG3DSA:3.30.160.605.9E-8159187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.785163192IPR007087Zinc finger, C2H2
SMARTSM003550.1163187IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280165187IPR007087Zinc finger, C2H2
SMARTSM003557.3195220IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280197220IPR007087Zinc finger, C2H2
SMARTSM0035517223244IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.84E-8235288No hitNo description
Gene3DG3DSA:3.30.160.602.8E-8236275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.572253283IPR007087Zinc finger, C2H2
SMARTSM003550.0039253278IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280255278IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058284313IPR007087Zinc finger, C2H2
SMARTSM003551.5284308IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280286308IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
METEAVNEDD KQRPLFRDIR RYYCEYCGIC RSKKSLLRSH ILSHHKDVFQ TVKIDEISAF  60
KAANQKVRHT CEECGASFWK PAHLVQHMRS HSVERPFACP VEDCYFIYRR KDHLNRHLLK  120
HQGKVFNCPV EKCNRTFTFQ GNMTRHVNEH HVDELPCEGK KQHVCEEPGC GKIFMFASKL  180
KKHEDSHLKV ESLEIYCGEP QCMKPFTNSE CLKAHIQSCH RYVKCEKCGT QQLRKNFKRH  240
QRLHEGVVSE ERIKCSFQGC EQTYSKKSNL NKHVKAVHEK LRPFRCRTSG CQQTFPYKHV  300
RDNHEKTHVY EQGDFLEADE RWRSRPRGGR KRERVTIEAL TRKRVVPVDC SSIMENGDEY  360
LRWLLADDNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A5e-176924622186Aart
2i13_B5e-176924622186Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020587074.10.0transcription factor IIIA isoform X1
RefseqXP_020587075.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-119TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2I0WK120.0A0A2I0WK12_9ASPA; Lysine-specific demethylase REF6
STRINGXP_008793643.11e-177(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-112transcription factor IIIA