PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_08053
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 95aa    MW: 10316.9 Da    PI: 6.0674
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_08053genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000793254223
                EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                +C  C  sFs+  +L +H  + H
  PEQU_08053 32 QCLQCQASFSDVNDLINHVEKlH 54
                6*****************99988 PP
2zf-C2H221.27.5e-076990223
                EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                +Cp C+k+F+++ +L+ H  +H
  PEQU_08053 69 VCPLCDKTFRDPVLLVDHVENH 90
                7*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.683154IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.87E-53290No hitNo description
PfamPF138940.00113254No hitNo description
PROSITE patternPS0002803354IPR007087Zinc finger, C2H2
SMARTSM003555.16890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
PfamPF128740.0477086No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MQKLSAATNQ ALKKAKCGMM LSFGAGGEVM EQCLQCQASF SDVNDLINHV EKLHENGVQG  60
GCDLVTVDVC PLCDKTFRDP VLLVDHVENH VKSAR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020587018.13e-61zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B99e-24SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A2I0W9301e-34A0A2I0W930_9ASPA; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
STRINGOPUNC07G18180.12e-26(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.12e-16C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]