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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_08053 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 95aa MW: 10316.9 Da PI: 6.0674 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00079 | 32 | 54 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C C sFs+ +L +H + H PEQU_08053 32 QCLQCQASFSDVNDLINHVEKlH 54 6*****************99988 PP | |||||||
2 | zf-C2H2 | 21.2 | 7.5e-07 | 69 | 90 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C+k+F+++ +L+ H +H PEQU_08053 69 VCPLCDKTFRDPVLLVDHVENH 90 7*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.68 | 31 | 54 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.87E-5 | 32 | 90 | No hit | No description |
Pfam | PF13894 | 0.0011 | 32 | 54 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 33 | 54 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.1 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.047 | 70 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MQKLSAATNQ ALKKAKCGMM LSFGAGGEVM EQCLQCQASF SDVNDLINHV EKLHENGVQG 60 GCDLVTVDVC PLCDKTFRDP VLLVDHVENH VKSAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020587018.1 | 3e-61 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like | ||||
Swissprot | Q0D5B9 | 9e-24 | SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | A0A2I0W930 | 1e-34 | A0A2I0W930_9ASPA; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
STRING | OPUNC07G18180.1 | 2e-26 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4763 | 33 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 2e-16 | C2H2 family protein |
Publications ? help Back to Top | |||
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