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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_07973 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 347aa MW: 39019.1 Da PI: 10.0634 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.5e-20 | 112 | 162 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +g+W+AeIrdp+ +rkr++lg+f +aeeAa a++ a+ +l+ge PEQU_07973 112 RFRGVRHRP-WGKWAAEIRDPN---QRKRVWLGTFNSAEEAATAYDSAAVRLHGE 162 79****888.**********93...36**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.06E-30 | 111 | 171 | No hit | No description |
SMART | SM00380 | 4.5E-38 | 112 | 175 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-31 | 112 | 170 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.065 | 112 | 169 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 112 | 162 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 112 | 171 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.1E-10 | 113 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-10 | 135 | 151 | IPR001471 | AP2/ERF domain |
CDD | cd00086 | 0.00905 | 266 | 327 | No hit | No description |
SuperFamily | SSF46689 | 2.41E-7 | 266 | 328 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-12 | 275 | 328 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.7E-6 | 285 | 322 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MSSRLDVHES NSPEHTGELI LARPEEEAED DARRKSEKAS DVLPTGKLRS IRILFTDADA 60 TDSSSSDRED VDHIRRHVRE IEFKSATVNG RIPAKEPPKA SWVLPKDCAL KRFRGVRHRP 120 WGKWAAEIRD PNQRKRVWLG TFNSAEEAAT AYDSAAVRLH GEKAVTNFPH QNHSVLPVSP 180 AKESAVGVDS AGEDPVATAA ICEDKRPPSG VLKKPDCLRF CCLVPTDSER TAVERARLEL 240 KQEPKQKLKK GCKENIVGIR EQFLLKKRTV RVTGDTASIL KARWQSHSKS PFRTEEDKAQ 300 LIKESGLHLK EINNWIMTQR NRNWRSHSSS TVLKSKCNCN AGNAARF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 111 | 174 | 4 | 68 | ATERF1 |
3gcc_A | 2e-19 | 111 | 174 | 4 | 68 | ATERF1 |
5wx9_A | 3e-19 | 112 | 171 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020586993.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | P48000 | 3e-40 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A2I0VLQ9 | 1e-156 | A0A2I0VLQ9_9ASPA; Homeobox protein knotted-1-like 3 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11573 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 8e-35 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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